LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo08g0145	ATGCTGAAATCGGGGACGATGGGAATGGAGGAGAGGAAACAGGCGAAGAAACCAGCACAAGCCAGCTCCAGAAAGGGTTGTATGAGAGGCAAAGGTGGCCCTGAGAATGCGAGCTGCACCTATAAGGGTGTTAGGCAGAGAACTTGGGGCAAATGGGTTGCTGAGATCCGTGAACCCAATCGTGGTGCTCGTCTCTGGCTTGGTACCTTTGAGACCTCTCATGAAGCTGCTCTTGCTTATGATACTGCTGCTCGTAAGCTCTATGGCCCTGATGCTAAGCTCAATCTCCCTCTTCATCACCATCACCATTCTTCTTCTAGTAATTCCCCCCAAATTCATCGCAACCACCCTCTTATTAATAATATTATTACTACTCCACCACCAGCAACACCACTTATTAGTTCTTCTTGTAATAATAGCGTCAACACAGCGTCGTCCATGGTGGCCTCTCTTCATCAGCAAGTTAGGCCACCAATATACCGCAGTGATTCTTCATCCATTGTGTCTTCTTCCCTTCCATTGGACAGCACCAACAATAAGGAGGAGGATGTTCTTCGACCGTTCTGGGGATCAGTGAATGATTGTTTGCCTGTGTTTGATGAATCAATCTGGACAGAAGCAGCCATGTCCCTTGATTTCCCTGTAATTGCTGCTGCAGAGGCTGCCACTGGAATTTACCCAAACGCCAACTTGGCAGATGTTGGTGTTTGGGACACCCCATGGTGCATGTAA	732	0.4809	MLKSGTMGMEERKQAKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDTAARKLYGPDAKLNLPLHHHHHSSSSNSPQIHRNHPLINNIITTPPPATPLISSSCNNSVNTASSMVASLHQQVRPPIYRSDSSSIVSSSLPLDSTNNKEEDVLRPFWGSVNDCLPVFDESIWTEAAMSLDFPVIAAAEAATGIYPNANLADVGVWDTPWCM*	244

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo08g0145	243	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D	15	220	-	-
	Amo08g0145	243	Pfam	AP2 domain	40	89	IPR001471	GO:0003700\|GO:0006355
	Amo08g0145	243	PRINTS	Ethylene responsive element binding protein signature	41	52	IPR001471	GO:0003700\|GO:0006355
	Amo08g0145	243	PRINTS	Ethylene responsive element binding protein signature	63	79	IPR001471	GO:0003700\|GO:0006355
	Amo08g0145	243	SUPERFAMILY	DNA-binding domain	40	98	IPR016177	GO:0003677
	Amo08g0145	243	SMART	rav1_2	40	103	IPR001471	GO:0003700\|GO:0006355
	Amo08g0145	243	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	15	220	-	-
	Amo08g0145	243	Gene3D	AP2/ERF domain	40	99	IPR036955	GO:0003700\|GO:0006355
	Amo08g0145	243	MobiDBLite	consensus disorder prediction	1	39	-	-
	Amo08g0145	243	CDD	AP2	39	92	IPR001471	GO:0003700\|GO:0006355
	Amo08g0145	243	ProSiteProfiles	AP2/ERF domain profile.	40	97	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo08g0145	Amo-Chr8	2585214	2585945	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Amo08g0145		AP2	2.8e-14	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo06g0716	06	10133552	10135853	Amo08g0145	08	2585214	2585945	PCT
	Amo08g0145	08	2585214	2585945	Amo06g0716	06	10133552	10135853	PCT