Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0138 ATGGCGGAGGAAGGAGTAGTGATCGGTTGCCACAGCGTGGATGAGTGGAAGGATCAGCTCAAGAAGGCAGAAGACTCCAACAAACTGGTTGTAGTGGATTTCACAGCTTCTTGGTGTGGGCCGTGCCGCTTCATTGCCCCAATTGTGGCGGAGTTTGCTAAGAAGTTCACAAATGTGGCGTTCCTGAAGGTGGATGTGGATGAATTGAAGACTGTGGCTGAGGAGTGGGGAATTGAGGCAATGCCAACCTTCCTCTTCATCAAACAAGGTAAATTAGTAGACAAGGTCGTTGGCGCTAAGAAGGACGAACTTCAATCCACTATCACCAAGCATGTTGCTGCTGCTGCTTGA 351 0.4957 MAEEGVVIGCHSVDEWKDQLKKAEDSNKLVVVDFTASWCGPCRFIAPIVAEFAKKFTNVAFLKVDVDELKTVAEEWGIEAMPTFLFIKQGKLVDKVVGAKKDELQSTITKHVAAAA* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0138 116 PRINTS Thioredoxin family signature 30 38 - -
Amo08g0138 116 PRINTS Thioredoxin family signature 38 47 - -
Amo08g0138 116 PRINTS Thioredoxin family signature 77 88 - -
Amo08g0138 116 CDD TRX_family 18 108 - -
Amo08g0138 116 PANTHER THIOREDOXIN 1 114 - -
Amo08g0138 116 PANTHER THIOREDOXIN 1 114 - -
Amo08g0138 116 TIGRFAM thioredoxin: thioredoxin 22 111 IPR005746 GO:0015035
Amo08g0138 116 Gene3D Glutaredoxin 1 115 - -
Amo08g0138 116 ProSitePatterns Thioredoxin family active site. 31 49 IPR017937 -
Amo08g0138 116 ProSiteProfiles Thioredoxin domain profile. 1 113 IPR013766 -
Amo08g0138 116 SUPERFAMILY Thioredoxin-like 8 113 IPR036249 -
Amo08g0138 116 Pfam Thioredoxin 11 109 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0138 Amo-Chr8 2516296 2517249 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0138 08 2516296 2517249 Amo17g2209 17 113227526 113228609 hybridization
Amo06g0714 06 10124333 10125036 Amo08g0138 08 2516296 2517249 PCT
Amo08g0138 08 2516296 2517249 Amo06g0714 06 10124333 10125036 PCT