Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g2362 ATGGCGAACAGCAACCTCCCTCGAAGAATCATCAAGGAAACGCAGCGTTTGCTCAGTGAGCCAGCACCTGGAATTAGTGCTTCGCCTTCGGAAGACAACATGCGATATTTCAATGTGATGATCCTTGGCCCTACTCAGTCACCCTATGAAGGTGGAGTTTTCAAGTTAGAACTATTTTTGCCAGAAGAATATCCAATGGCTGCTCCAAAGGTTCGGTTTCTAACAAAAATATATCATCCAAACATCGATAAGCTTGGCAGGATATGTCTTGATATTCTGAAAGATAAGTGGAGCCCTGCCCTTCAGATACGCACTGTACTCTTGAGTATCCAGGCTCTGTTGAGTGCACCAAACCCAGATGATCCACTATCTGAGAACATTGCCAAGCATTGGAAAAGTAATGAGGCCGAGGCTGTTGAAACTGCGAAGGAATGGACTCGATTATATGCTAGCGGTGCATGA 462 0.4524 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASGA* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g2362 153 SMART ubc_7 8 151 - -
Amo07g2362 153 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 151 IPR000608 -
Amo07g2362 153 SUPERFAMILY UBC-like 7 151 IPR016135 -
Amo07g2362 153 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Amo07g2362 153 Gene3D Ubiquitin Conjugating Enzyme 1 152 IPR016135 -
Amo07g2362 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 35 2 150 - -
Amo07g2362 153 Pfam Ubiquitin-conjugating enzyme 9 145 IPR000608 -
Amo07g2362 153 CDD UBCc 7 146 IPR000608 -
Amo07g2362 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g2362 Amo-Chr7 70413998 70417514 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g2362 8 118 Miscellaneous Gene Families AT3G17000 29.060 1.15e-11 59.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo07g2362 07 70413998 70417514 Amo13g2425 13 42632842 42633454 PCT
Amo07g2362 07 70413998 70417514 Amo03g0143 03 2640930 2644827 PCT
Amo13g2425 13 42632842 42633454 Amo07g2362 07 70413998 70417514 PCT
Amo03g0143 03 2640930 2644827 Amo07g2362 07 70413998 70417514 PCT