Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g2087 ATGAGCAACATAAGCTTGGTAGAGGCAAGGCTTCCACCAGGGTTCAGATTTCATCCAAAAGATGAAGAGCTTGTGTGTGATTACTTGATGAAGAAGTTCACGCACAATGAATCCCTTCTCATGATTGATGTCGACCTCAACAAGTGTGAGCCATGGGATATTCCTGAAACAGCATGTGTGGGAGGGAAGGAGTGGTACTTCTACACACAGAGAGACAGAAAGTATGCAACGGGTCTGCGTACAAACAGAGCAACGGCATCAGGATATTGGAAGGCCACTGGCAAGGACAGGCCTATCCTTAGGAAGGGCAGCCTTGTTGGTATGCGAAAGACTCTTGTCTTCTATCAAGGTCGGGCTCCCAAAGGCCGTAAGACTGAGTGGGTCATGCATGAGTTTCGCGTTGAACCTCCTCTTCCTCCCCCCAACACTACTTCTTCTAAGGAAGATTGGGTGTTGTGTAGGGTGTTCTACAAGAACAGAGAAGTTAGTGGCAAACCTAATAGCATGGGAAGCTGCTATGATGACACAGGCTCTTCATCTCTTCCAGCATTAATGGATTCTTACATCAGCTTTGACCAACAACAACAACCTCAAACCCATCTTCATGCTGATGAGTATGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCACGCCCAAACAAGCCCTATTTTCAACCACATAATGGAGCCTAAGTTATTCCCTACCAACAACAACAACAACAATAATGCAACTTTATATGGTGGAGGAGGAACTACTACAACACCCAATTTGGGTTCTTGCTTAGACCCTTTTTCATGTGATAGGAAAGTATTGAAAGCTGTTTTGAGTCAGCTCACAAATATGGAAAGAAACATACCTAATAATAATAACAACAATACAAATAGTATAAAAGGGTCACCAAGTTTAGGAGAAGGTAGTTCTGAGAGTTACTTATCTGAGGTTGGCATGCCCAACTTGTGGAACAATTATTGA 972 0.4372 MSNISLVEARLPPGFRFHPKDEELVCDYLMKKFTHNESLLMIDVDLNKCEPWDIPETACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILRKGSLVGMRKTLVFYQGRAPKGRKTEWVMHEFRVEPPLPPPNTTSSKEDWVLCRVFYKNREVSGKPNSMGSCYDDTGSSSLPALMDSYISFDQQQQPQTHLHADEYEQVPCFSIFSHAQTSPIFNHIMEPKLFPTNNNNNNNATLYGGGGTTTTPNLGSCLDPFSCDRKVLKAVLSQLTNMERNIPNNNNNNTNSIKGSPSLGEGSSESYLSEVGMPNLWNNY* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g2087 323 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
Amo07g2087 323 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 224 - -
Amo07g2087 323 PANTHER NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN 3 224 - -
Amo07g2087 323 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Amo07g2087 323 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Amo07g2087 323 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Amo07g2087 323 MobiDBLite consensus disorder prediction 282 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g2087 Amo-Chr7 64017833 64024100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g2087 2 321 NAC Transcription Factor Family AT1G56010 58.859 1.18e-125 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo07g2087 NAM 5.2e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g2232 18 69026852 69033091 Amo07g2087 07 64017833 64024100 hybridization