Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g3084 ATGCTTACGACGCAGCCTCTTTCGTCGTTTACTACTCCACTATTCCACTCAAACCCACCAACTCAATCATCCTCTTATATCCCTCTCTCCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTCCAACACGACGTCGTTCGGCAACCACGACCTCCACTCCTTCTAAAACGACTCTCAAGCGCCTCACTTCTCGCGTAGTTGAACTCACTCGCCGAAGACAGCTTCGCCAGATTTTGGATGAGATTGAAGTTGCAAAGAGGGATTTAGGGAAGCTGAACACGATAGTGATGAATGCCGTGATTGAAGCTTGTGTTCATTGCGGTGACATAGATTCTGCGCTTAGGATATTCGATGAGATGAAGAAGCCAAAGGGTTGTGGTGTGGACAATGTCACCTATGCTACACTTTTGAAGGGTTTAGGTGAGGCSCYAAAAATTGATGAAGCATTTCAGRTGCTTGAATCAGTGGAAAATGGTACTGCCTTGGGAAGTCCAGAGTTGTCYGCTCCATTGATTTTGGGTTTGCTAAATGCCTTAATTCAAGCAGGAGACTTGCGTCGRGCCAATGGCCTCCTTGCACGATATGGGTTTTTGTTCCGTGAAGGTGGCAGTTTTCCAGTCTCAGTATATAACTTACTAATGAAGGGGTATATAAACTCTGGCTGTCCTCACACTGCACTAAATATGCTCAATGAAATAGTACATCAAGGATTAAGGCCTGACAAGCTCACATATAATACACTAATTTTAGCATGTGTCAAGAMTGAAAAGATGGATACTGCAATGCYGTTTTTGGAGGAAATGAAGGGCAATTCAGAAAAATTCATTCATGAAGATCTGTTTCCAGACATCATTACATATTCAACATTGCTCAAGGGTTTTGGAGAGGCAAAAGATCTTGCTTCAGTTCTGAGAATAGTGCTGGAAATGAAATCATGCCATGAATTAAACATTGACAGAACTGCTTACACTGCAATAATTGATGCTTTACTAAAATGTGGCTCGGTTAAGGGTGCTTTGTGTATTTTTGGAGAAATATTGAAGAAAGCTGGTAGGAATGCCAAGTTAAGGCCAAAACCTCATCTATACCTCTCCATGATGCGGGCTTTTGCTTTACAAGGAGATTATGATCTAGTTAAGAATTTGCATAAGCGGATTTGGCCAGATTCTGCAGGGATCATCTTGCCAGTTGCACAGGAAGAAGCTGATCACCTTCTCATGGAAGCAGCACTGAATGCTGGCCAGGTTGATATTGCTGCTAAAATTCTTTCTGATATTGTTTCAAGATGGAAAGGCATATCATGGACCAGTCGTGGAGGCATGGTTGCTTCGCGCATTGAGGCTATCTTGGGATTTTCCAAATCTATATTTAGTCCTTACTTACTTCCTGAGGTTTCACCCGATGAACCAGTTCAGAATTTCATGGTACCGTTTGAAGCGGCACAGCCACTACATGGTGCCATAAAGCTGGAGAAAGTGGCCATGCGTTTCTTAAAGGATAAAGTTGTTCCTATTGTAGACGAGTGGGGGAGCTGTGTAGGGCTGTTGCACCGTGAAGARTGCAATCAGTTGGATGCTTCCTTATCAACAATGATGAGAAGCCCTCCACCATGTGTYACAAATTTGACATCTATTGGTTATGTAGTTGATTTAATTTTAGAGAAACGGTACCCAATGGTTATCYTTGTAAATTACACAAGCTCCTTTYKCACTTCATACAGCWCGAGGGCTCTTGGAGTTTTTACATTAGAACAATTGAACAGGSTTAAAAGAACACCTGTATCTGGATTAAAAGGGACAGAAATTCCAGTCCACGCAAGATGA 1836 0.4199 MLTTQPLSSFTTPLFHSNPPTQSSSYIPLSFSSSSSSSSSSSSSAPTRRRSATTTSTPSKTTLKRLTSRVVELTRRRQLRQILDEIEVAKRDLGKLNTIVMNAVIEACVHCGDIDSALRIFDEMKKPKGCGVDNVTYATLLKGLGEAXKIDEAFQXLESVENGTALGSPELSAPLILGLLNALIQAGDLRRANGLLARYGFLFREGGSFPVSVYNLLMKGYINSGCPHTALNMLNEIVHQGLRPDKLTYNTLILACVKXEKMDTAMXFLEEMKGNSEKFIHEDLFPDIITYSTLLKGFGEAKDLASVLRIVLEMKSCHELNIDRTAYTAIIDALLKCGSVKGALCIFGEILKKAGRNAKLRPKPHLYLSMMRAFALQGDYDLVKNLHKRIWPDSAGIILPVAQEEADHLLMEAALNAGQVDIAAKILSDIVSRWKGISWTSRGGMVASRIEAILGFSKSIFSPYLLPEVSPDEPVQNFMVPFEAAQPLHGAIKLEKVAMRFLKDKVVPIVDEWGSCVGLLHREECNQLDASLSTMMRSPPPCVTNLTSIGYVVDLILEKRYPMVIXVNYTSSFXTSYSXRALGVFTLEQLNRXKRTPVSGLKGTEIPVHAR* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g3084 611 Gene3D Tetratricopeptide repeat domain 279 453 IPR011990 GO:0005515
Amo06g3084 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Amo06g3084 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 127 IPR002885 -
Amo06g3084 611 Pfam PPR repeat 326 353 IPR002885 -
Amo06g3084 611 Gene3D Tetratricopeptide repeat domain 50 163 IPR011990 GO:0005515
Amo06g3084 611 Gene3D Tetratricopeptide repeat domain 178 278 IPR011990 GO:0005515
Amo06g3084 611 PANTHER OS09G0431600 PROTEIN 32 596 IPR044781 -
Amo06g3084 611 MobiDBLite consensus disorder prediction 1 63 - -
Amo06g3084 611 TIGRFAM PPR: pentatricopeptide repeat domain 101 126 IPR002885 -
Amo06g3084 611 TIGRFAM PPR: pentatricopeptide repeat domain 213 245 IPR002885 -
Amo06g3084 611 TIGRFAM PPR: pentatricopeptide repeat domain 248 275 IPR002885 -
Amo06g3084 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Amo06g3084 611 CDD CBS_pair_SF 494 568 - -
Amo06g3084 611 Pfam Pentatricopeptide repeat domain 282 316 IPR002885 -
Amo06g3084 611 Pfam PPR repeat family 211 258 IPR002885 -
Amo06g3084 611 Pfam PPR repeat family 97 144 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g3084 Amo-Chr6 97763998 97770701 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g3084 75 378 Glycosyltransferase AT1G05670 25.658 6.69e-18 85.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3876 16 150560459 150571773 Amo06g3084 06 97763998 97770701 hybridization