Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g3079 ATGGCTTCATCCTWCACCATCCTCCTCTTCTTCTTCACTCTCTTCACTCTTTCATATGCATCAGACATGTCCATAATCTCGTACGACAAAACCCACTCCAACACATGGAGAACCGATGAGGAAGTCATGGCTATGTACGAGGAATGGCTTGTGAAGCATGGAAAGAAAYCAAGTAACGGTCTCTTRAGTGGYGAGAGCAAGAATCGGTTCGAGATCTTTAAGGATAACCTCCGGTTCATTGATGAACAGAACAGTTTACCGAACCGGACTTTCCAGCTCGGTCTGAACCGGTTCGCCGATCTGACCAACGAGGAGTACAGGGCTAAGTAYTTGGGTACCAGGATGGATCCTAASCGTMGGATGATGAAGGCTAAGACCAGGAGCAACCGATACGCGCCACGTGTCGGGGACAAGTTGCCGGAGAGTGTTGATTGGAGGAAGGAAGGTGCTGTTGTTGCAGTCAAAGACCAAGGAGGATGTGGGAGTTGTTGGGCATTCTCAACAATTGCTGCAGTGGAAGGAATAAACAAGATCGTAACAGGGGATCTGATTTCATTATCAGAGCAAGAGCTTGTGGACTGTGATACATCATACAACGAAGGGTGTAGTGGTGGACTCATGGACTATGCCTTTGAGTTCATCATCAACAATGGTGGCATTGACTCTGAAGCCGATTACCCTTACACTGGCTTTGATGGCACATGTGACCAAAACAGGAAAAATGCTAAGGTTGTGAACATTGATGACTATGAAGATGTTCCTGCCTATGATGAATTGGCATTGAAAAAGGCCGTTGCGAATCAGCCAGTGGCAGTTGCCATTGAAGGAGGTGGCAGGGAATTCCAGTTATATGTATCTGGTGTATTCACAGGAAGATGTGGAACAGCATTGGACCATGGAGTTGCTGCTGTAGGGTATGGGACAGAAGGTGGGCATGAGTATTGGATTGTGAGGAACTCATGGGGAGCTAGCTGGGGAGAGGACGGTTACATCCGAATGGAGCGGAATCTTGGTAACAGCAGAGCAGGCAAGTGTGGAATCGCCATCGAGCCTTCTTACCCTATTAAGAATGGCCCCAATCCTCCTAACCCCGGACCATCTCCGCCGTCGCCTGTGAAGCCGCCGTCCGTGTGTGATAACTACTTCAGCTGCCAATCTGGAAACACATGCTGCTGCCTTTTCCAGTTTGGAAATGCGTGCTTTGATTGGGGATGCTGCCCTCTTGAAGGTGCTACCTGCTGTGATGATCACTACAGCTGCTGCCCTGCCGACTACCCCGTTTGTGACACTTTCAGAGGTCTTTGCCTCAAGAACAAGAACAACCCATTCGGAGTGAAGGCGTTGAAGAGAACTGCAGCTAAACCTCACTGGGCCTTCAATGGTGTGAGCAGTGCTTAA 1398 0.4878 MASSXTILLFFFTLFTLSYASDMSIISYDKTHSNTWRTDEEVMAMYEEWLVKHGKKXSNGLLSGESKNRFEIFKDNLRFIDEQNSLPNRTFQLGLNRFADLTNEEYRAKYLGTRMDPXRRMMKAKTRSNRYAPRVGDKLPESVDWRKEGAVVAVKDQGGCGSCWAFSTIAAVEGINKIVTGDLISLSEQELVDCDTSYNEGCSGGLMDYAFEFIINNGGIDSEADYPYTGFDGTCDQNRKNAKVVNIDDYEDVPAYDELALKKAVANQPVAVAIEGGGREFQLYVSGVFTGRCGTALDHGVAAVGYGTEGGHEYWIVRNSWGASWGEDGYIRMERNLGNSRAGKCGIAIEPSYPIKNGPNPPNPGPSPPSPVKPPSVCDNYFSCQSGNTCCCLFQFGNACFDWGCCPLEGATCCDDHYSCCPADYPVCDTFRGLCLKNKNNPFGVKALKRTAAKPHWAFNGVSSA* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g3079 465 Gene3D Granulin 375 438 IPR037277 -
Amo06g3079 465 SMART pept_c1 139 355 IPR000668 GO:0006508|GO:0008234
Amo06g3079 465 Coils Coil 464 465 - -
Amo06g3079 465 Pfam Granulin 389 436 IPR000118 -
Amo06g3079 465 MobiDBLite consensus disorder prediction 355 370 - -
Amo06g3079 465 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 297 307 IPR025660 -
Amo06g3079 465 SUPERFAMILY Granulin repeat 375 409 - -
Amo06g3079 465 MobiDBLite consensus disorder prediction 350 370 - -
Amo06g3079 465 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 28 384 - -
Amo06g3079 465 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 157 168 IPR000169 -
Amo06g3079 465 Gene3D Cysteine proteinases 19 357 - -
Amo06g3079 465 SUPERFAMILY Cysteine proteinases 37 355 IPR038765 -
Amo06g3079 465 Pfam Papain family cysteine protease 139 355 IPR000668 GO:0006508|GO:0008234
Amo06g3079 465 PANTHER CYSTEINE PROTEASE 28 384 - -
Amo06g3079 465 CDD Peptidase_C1A 140 354 IPR039417 -
Amo06g3079 465 Pfam Cathepsin propeptide inhibitor domain (I29) 46 106 IPR013201 -
Amo06g3079 465 SMART Inhibitor_I29_2 46 106 IPR013201 -
Amo06g3079 465 SMART GRAN_2 378 435 IPR000118 -
Amo06g3079 465 PRINTS Papain cysteine protease (C1) family signature 299 309 IPR000668 GO:0006508|GO:0008234
Amo06g3079 465 PRINTS Papain cysteine protease (C1) family signature 157 172 IPR000668 GO:0006508|GO:0008234
Amo06g3079 465 PRINTS Papain cysteine protease (C1) family signature 314 320 IPR000668 GO:0006508|GO:0008234
Amo06g3079 465 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 314 333 IPR025661 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g3079 Amo-Chr6 97693916 97698378 Dispersed/Transposed