Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2070 ATGAGTTCCTCAGATTCAAGGGATGATAAAAAAGGTTCGCAACATAATGATGAAGCAACAAATGAAGAAGACAAAACCATGAAGAAACCAGACAAGATTATTCAGTGTCCAAGATGCAAGAGCATGGACACAAAATTCTGTTACTTCAACAACTACAACGTCAACCAACCGCGCCATTTCTGCAAGAACTGCCAGCGCTACTGGACAGCCGGCGGAACAATGAGGAATGTCCCAGTTGGCGCCGGCAGAAGGAAGCACAAGCACTTGGCTTCACAGTTCCGCAGTGTCCTAGTAGCCGCCGCCGCAGCCGCAGCCGCGGCCACCCGAGTTCCAGAATCCACAAATTCGTCGTCAAAAAATAATAAGAGTGACAATGCTAGTGGTACCGTGTTGGAATTTGGCCAGGAAAGAGGAATTGTGAACGAAAATTCGTCTATCATTTATTGTACTGAATCTGAGGAGGAATCATTATCGTTGTGTACTAACAATAATAATGAATCTTCTTCAGAAAACAACAACAACAACGCATCAAAATTGTTGCAATGTTACCCTGTTCCTCCATGGGTTATGCCTTGGAACAATGTTGTTCCACAACATGGTCCAAACTCAATTCAATGGTGTCCAACACCAATGGTGGCAGCAGCAACAATTCCAGTTCATCTTGTTCCAGGGCCATGCTGGGGTGGAACACCTGTGTGGGTCGCACCTGGACCTGCACCGGGGAATGTGTCAATAGGATCCAATCATAGCCGTTCATCGCCTTCTTCGTCCACTAGTAATAACAATAGCTGCTATTCCGGCAACGGGAATTCTCCAATACTTGGCAAGCATAGTAGAGATCACAGTACTGTTTTCATTGATGAACAGAAATCAAGTAAATGTTTCTTGGTTCCGAAGATTCCGAGAATTGATGAGCAAAATAATAATGAGGCTTCAGTAAGTCCTATTTGGGCTACATTGGCATGA 966 0.4462 MSSSDSRDDKKGSQHNDEATNEEDKTMKKPDKIIQCPRCKSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKHKHLASQFRSVLVAAAAAAAAATRVPESTNSSSKNNKSDNASGTVLEFGQERGIVNENSSIIYCTESEEESLSLCTNNNNESSSENNNNNASKLLQCYPVPPWVMPWNNVVPQHGPNSIQWCPTPMVAAATIPVHLVPGPCWGGTPVWVAPGPAPGNVSIGSNHSRSSPSSSTSNNNSCYSGNGNSPILGKHSRDHSTVFIDEQKSSKCFLVPKIPRIDEQNNNEASVSPIWATLA* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2070 321 MobiDBLite consensus disorder prediction 244 278 - -
Amo06g2070 321 ProSiteProfiles Zinc finger Dof-type profile. 34 88 IPR003851 GO:0003677|GO:0006355
Amo06g2070 321 MobiDBLite consensus disorder prediction 109 127 - -
Amo06g2070 321 MobiDBLite consensus disorder prediction 108 127 - -
Amo06g2070 321 Pfam Dof domain, zinc finger 31 88 IPR003851 GO:0003677|GO:0006355
Amo06g2070 321 ProSitePatterns Zinc finger Dof-type signature. 36 72 IPR003851 GO:0003677|GO:0006355
Amo06g2070 321 MobiDBLite consensus disorder prediction 244 277 - -
Amo06g2070 321 PANTHER CYCLIC DOF FACTOR 3-LIKE 6 320 - -
Amo06g2070 321 PANTHER CYCLIC DOF FACTOR 2 6 320 IPR045174 GO:0003700|GO:0006355
Amo06g2070 321 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2070 Amo-Chr6 75383295 75384491 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2070 16 321 C2C2-Dof Transcription Factor Family AT3G47500 35.965 3.37e-49 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo06g2070 zf-Dof 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2070 - - ahf:112696882 554.288