Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1898 ATGGAAGGAATATCTGGGAATTCTTCATGCACAGCAAGGCCAGTGTTGGAGAAGAAAGCAAGGCCACAAGAGCAATTGAACTGTCCAAGGTGCAATTCAACCAACACAAAGTTTTGTTACTATAACAATTATAGCCTCACTCAGCCCAGGTACTTCTGCAAGACTTGCAGAAGGTACTGGACTGAGGGAGGCTCTCTTCGCAACGTCCCTGTTGGTGGCGGTTCAAGGAAGAATAAGAAGATCATCTCATCATCAGCTTCTTCTTCTTCATCTTCTCTATCGTCATCTTCTGTACCAAAGGTTCCAGATTTGAACCCACCACAAAACCCTAATAATAAAATGATGCAAGGAGGAGGGTATGATCTCAATTTAGCTTTTCCAGCTATGGACAACTTTCATCATCATGCTTTGTCTGCATATGTTGAGATTCCGAAACTCGAAACCGGAGGAGGAGGAGGAGGAGGTGATGGATCTTCTTCTACTGCTGCTGCTGCTGTTGCTGCTCCAAGTTCTCTATCAGCGATTGAGTTGCTAAGGTCTTCTGGGATGGCTGCTCCTTATGTCCATTCTTCATTGATGCCAAATTCAAATGCTCTTTACCCTTCTGGGTTTCCCATGCAAGAGATTAAGCCCAGTCTTGGGTTTTCTTTGGTTGATGGTGGGCAAGTAGAGAATAATGATAATCATAATAATGGGAGGCTTCTGTTCCCTTTTGGAGTTGACCAAAACAACAAACAACAAGCTGGGAACAATTCAACTGGGTATTGGACTGGTATTATTGGTGAAGGCTCATCATGGTAA 801 0.437 MEGISGNSSCTARPVLEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKIISSSASSSSSSLSSSSVPKVPDLNPPQNPNNKMMQGGGYDLNLAFPAMDNFHHHALSAYVEIPKLETGGGGGGGDGSSSTAAAAVAAPSSLSAIELLRSSGMAAPYVHSSLMPNSNALYPSGFPMQEIKPSLGFSLVDGGQVENNDNHNNGRLLFPFGVDQNNKQQAGNNSTGYWTGIIGEGSSW* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1898 266 ProSitePatterns Zinc finger Dof-type signature. 28 64 IPR003851 GO:0003677|GO:0006355
Amo06g1898 266 ProSiteProfiles Zinc finger Dof-type profile. 26 80 IPR003851 GO:0003677|GO:0006355
Amo06g1898 266 MobiDBLite consensus disorder prediction 78 116 - -
Amo06g1898 266 Pfam Dof domain, zinc finger 24 80 IPR003851 GO:0003677|GO:0006355
Amo06g1898 266 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 14 260 - -
Amo06g1898 266 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 260 IPR045174 GO:0003700|GO:0006355
Amo06g1898 266 MobiDBLite consensus disorder prediction 67 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1898 Amo-Chr6 68656279 68657079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1898 18 266 C2C2-Dof Transcription Factor Family AT3G61850 45.683 1.08e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo06g1898 zf-Dof 2.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1898 - - gmx:100793115 290.812