Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0888 ATGGACCATGGTTGCTGCAGCAGTATCAGCATCAGTGGTTCCTTTTTTGGGTGGTTTATGTTTAAAAACGTAGAGAGTGGTGCAGCATTAATGGCTTCCTTAGAAGAAAAGGTTAAAACTTGTGGTGTTGGTGTTGTTGGGGGTCAAACTCTAGTTGCTGAGATGAAGCTCCTCAAGGAAATGCAAGAGCACTCTGGGGTGAGAAAGACTTTGAATTCAGAACTGTGGCATGCTTGTGCTGGCCCTCTTGTCTCTTTGCCTCAAGTGGGAAGTCTTGTTTATTACTTTCCCCAGGGACATAGTGAGCAGGTGGCAGCTTCCACCAGAAGAACAGCAACATCTCAGATTCCAAACTATCCAAACCTTCCATCTCAGTTGCTCTGCCAAGTTCAAAATGTCACACTTCATGCAGACAAAGATACAGATGAAATCTATGCTCAAATGAGTCTCCAGCCCTTGAATTCGGAGAAAGATGTGTTTCCTATATCTGATTTTGGCCTAAAGCACAGCAAGCATCCAACTGAGTTTTTCTGCAAAACTTTGACTGCAAGTGACACCAGCACACACGGCGGTTTCTCAGTTCCACGGAGGGCGGCAGAAAAGCTCTTTCCTCCACTGGACTACACAATTCAGCCTCCAACACAAGAACTAGTTGTCCGTGATTTGCATGACAATACTTGGACATTTCGACATATATACCGGGGTCAGCCCAAGAGACACCTTTTAACAACAGGATGGAGTTTATTTGTCGGATCAAAAAGGCTTAGAGCAGGYGATTCTGTTCTATTTATCAGGGATGAGAAATCYCAACTGCGAGTTGGTGTTAGGCGTGTTAATCGCCAACAAACAACATTGCCATCATCAGTTCTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCACGCGGCTTCTAACCGAATTCCTTTCACTATTTTCTATAATCCAAGGGCATGCCCTTCAGAATTTGTTATTCCACTTGCTAAGTACCGAAAATCTGTATATGGGACACAACTCTCAGTTGGCATGAGATTTGGTATGATGTTTGAGACAGAAGAATCCGGTAAGCGCAGGTATATGGGTACAATAGTTGGTATCAGTGACTTGGATCCTTTGAGATGGCCTGGTTCTAAGTGGCGAAATATTCAGGTGGAGTGGGATGAACCAGGATGTGGTGACAAGCAGAATAGAGTTAGTGTATGGGAAATTGAGACTCCTGAAAGCCTTTTTATATTTCCTTCTTTAACTTCGAGTCTAAAACGGCCATTACAGTCTGGATTTTTGGAAAACGACTGGGGAGCTTTGATACGAAGACCATATATAAGAGTTCCTGAAAACGGTGCAACGGAGCTGGCGAATTCAATGCCAAATATCTACTCTGAACACCTGATGAAAATGCTTTTGAAGCCACAACTTATTAACAATAATGGAGCCATGGCCATGCAACAAGAATCTGTTGCTATGAGAGGTACTCTACAAGATGCAAAGACRACACAGGCACCAGAGAACCATAAAGTTAATCTTGCTAGTACAGAGAACCTGCCACTGAAAAATTTGTATTCTCAATCTGTTCCTGAKCAAGCTAATGTCGTGAARTTACATTCTCAAGCGAAAAATGATAACCATATGTCTTCTGGAACAGTTATTGATAAGCCGAAGCTCGAACCTGAGGTATTAAATGATCAAATGTATGAGATTCCATCTGCAGGAACAGGAACCAACATTGAAAAAGTGGCCTCAAATCCTGCTAACTCTCAAAGTGTTGCGAACCAATTGGCATTCCTTAATCAAAACCAGAGTCAMRCACTTGCGCAATCCGGTTCATGGCCTATACAACCTCAGTTAGAATCATCGGTATCCCATCCTCAACTTGTTGACATGCCTCAAGGTGATTCTGCAATTGCAAACAGCATGCTTCCTCAGCTAGACATTGATGAATGGATGGTGTATTCTTCTAACCAAACTTTTGCTAACCAAAACCGATCAACTGGGCCGGTATCAGATTTTCAAGAGCATTCTGCCGCACTTCAACCTCAAGTAGTGAATCCTRCCATGCCAATGAACCAAGAAGTGTGGGATCAATATGTCAAGAATTTTAAGCTTTTGTCTCAAGTAGACCAGKTGACATCTGTCTGTCAGCCGGGGATGTACAGCCTCAACGGTATATCGAGTTCAAACAATTTGAGGGATCTTTCAGCSGAGAGCAATAATCAAAGTGAAATTTGTGTCGATGTTAGTAATAGTGTAAATACAACCATGGTTGATCCTTCAACTTCAAGCACCATTTTGGATGAGTATTGCACSCTGAAGGAGAGGGATTTCCAGAATCCACAAGATTGCATCGTCGGCAACTTAAGTTCTAGCCAGGATGTCCAGTCTCAGATAACCTCTGCAAGTCTAACTGAGTCACATGCCTTTCCTCTGCAAGACAACTCAGGTGGTACATCTTCAAGTCATGTTGATTTTGATGAAAGCAGCTTTCTGCAGAATAACTCATGGCAACCAGTTGCTGCGCCCGTGCGAACCTACACTAAGGTGCAAAAGGCAGGATCTGTAGGAAGATCAATTGATGTCACAACTTTCAAGAACTACGAAGAGCTGATCCGCGCGATTGAATGCATGTTRGGACTAGATGGTCTGCTGAATGACACCAAAGGTTCCGGCTGGAAACTGGTGTATGTGGATTATGAGAGTGATGTTCTTCTTGTTGGGGATGATCCTTGGGAGGAATTTGTCGGCTGCGTTCGATGCATCAGAATCTTATCGCCTTCAGAAGTTCAACAGATGAGTGAAGAGGGAATGAAGCTTCTCAACAGTGGAGCCTTGCAAGGGATCAATGTTTGA 2853 0.4325 MDHGCCSSISISGSFFGWFMFKNVESGAALMASLEEKVKTCGVGVVGGQTLVAEMKLLKEMQEHSGVRKTLNSELWHACAGPLVSLPQVGSLVYYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKDTDEIYAQMSLQPLNSEKDVFPISDFGLKHSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAASNRIPFTIFYNPRACPSEFVIPLAKYRKSVYGTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQSGFLENDWGALIRRPYIRVPENGATELANSMPNIYSEHLMKMLLKPQLINNNGAMAMQQESVAMRGTLQDAKTTQAPENHKVNLASTENLPLKNLYSQSVPXQANVVKLHSQAKNDNHMSSGTVIDKPKLEPEVLNDQMYEIPSAGTGTNIEKVASNPANSQSVANQLAFLNQNQSXXLAQSGSWPIQPQLESSVSHPQLVDMPQGDSAIANSMLPQLDIDEWMVYSSNQTFANQNRSTGPVSDFQEHSAALQPQVVNPXMPMNQEVWDQYVKNFKLLSQVDQXTSVCQPGMYSLNGISSSNNLRDLSAESNNQSEICVDVSNSVNTTMVDPSTSSTILDEYCTLKERDFQNPQDCIVGNLSSSQDVQSQITSASLTESHAFPLQDNSGGTSSSHVDFDESSFLQNNSWQPVAAPVRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMLGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSGALQGINV* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0888 950 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 57 948 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo06g0888 950 ProSiteProfiles B3 DNA-binding domain profile. 177 279 IPR003340 GO:0003677
Amo06g0888 950 SMART B3_2 177 279 IPR003340 GO:0003677
Amo06g0888 950 Pfam B3 DNA binding domain 177 278 IPR003340 GO:0003677
Amo06g0888 950 SUPERFAMILY DNA-binding pseudobarrel domain 165 306 IPR015300 -
Amo06g0888 950 Pfam Auxin response factor 303 386 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo06g0888 950 CDD B3_DNA 176 277 IPR003340 GO:0003677
Amo06g0888 950 ProSiteProfiles PB1 domain profile. 844 928 IPR000270 GO:0005515
Amo06g0888 950 SUPERFAMILY CAD & PB1 domains 848 923 - -
Amo06g0888 950 Gene3D - 840 933 - -
Amo06g0888 950 PANTHER AUXIN RESPONSE FACTOR 5 57 948 - -
Amo06g0888 950 Gene3D - 174 278 IPR015300 -
Amo06g0888 950 Pfam AUX/IAA family 842 931 IPR033389 -
Amo06g0888 950 Gene3D - 341 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0888 Amo-Chr6 12171302 12176966 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo06g0888 AUX_IAA 7.2e-10 CL0072