Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0881 ATGGGAGTTCCGGCGTTTTACCGGTGGCTGGCGGAGAAGTATCCGATGGTGGTTGTCGATGCCGTCGAGGAGGAACCGGTGGTGATCGACGGAATCGCGATTCCAGTGGATACGAGCAAGAAGAACCCTAACAACCTTGAATACGATAATCTGTACCTCGATATGAACGGCATCATTCACCCTTGTTTTCACCCCGAGGATAGGCCATCTCCGACTTCATTTGATGAGGTGTTCCAGTGCATGTTTGACTACATTGATAGGCTGTTTGTGATTGTCCGGCCTAGGAAGCTGCTCTACATGGCTATTGATGGTGTGGCACCGAGGGCTAAAATGAATCAGCAACGGTCTAGGCGGTTCAGAGCAGCAAAAGATGCAGCTGACGCAGCTGCTGAAGAAACTAGGTTAAGAGAGGAATTTGAGAGGGAGGGCAGAAAGCTTCCTCCCAAAGAAGAGTCCCAGACTTTTGATTCAAATGTCATTACACCTGGAACCGAATTTATGGCTGTTTTATCAATTGCGCTCCAGTACTATGTTCATCTTAGGTTAAACAATGACCCTGGTTGGCAGAATATTAAGGTTATTCTTTCAGATGCAAATGTTCCTGGTGAGGGGGAGCATAAGATTATGTCCTATATACGGTTACAGAGGAATCTTGAAGGTTATGATCCAAATACAAGACATTGCCTGTATGGTTTGGATGCTGATTTGATTATGTTGGCTTTAGCTACCCATGAAGTGCACTTTTCAATTCTAAGAGAGGTTGTATTTACTCCCGGTCAAGACAAATGTTTCCTCTGTGGTCAGATGGGTCACATGGCTGCTGACTGTGAAGGAAAGGCAAAAAGAAAGGCCGGAGAATTTGATGAAAAAGGAGATCCTATTGTGGTTAAAAAGCCTTACCAGTTTCTAAACATTTGGACATTGAGGGAATATCTGGAGTATGAGATGAAAATTCCGAATCCTTCATTTGAGATTGATTTTGAGCGAATTGTTGATGACTTTATCTTCATGTGCTTTTTTGTTGGCAATGATTTCCTTCCCCATATGCCTACACTAGAAATTAGAGAGGGTGCAATTAACTTGCTTCTAGCAGTATACAAGAAGGAGTTCAATGCACTAGGTGGTTATTTAACCAAAGGAAGTAAGCCAAATTTGGATAGAGTGGAGCACTTTATTCAGGCTGTTGGAGCTTATGAAGATAGAATTTTCCAGAAAAGAGCTCGATTGCATCAGCGACAAGCAGAAAGAATTAAGCGGGATAAGGCTCATTCAAGGAGGGGAGATGATGCCCAGCCTCAATTTCAACCAGAGTCTCTAGTTGCAGTTTCACGATTTCATGGTTCTCGTCTTGCTTCAGCTCCAACGCCTTCACCATTTCAACAATCTGGGCACCATGATCCCAGCTCATCTGGGAAAGACCATAGGAGTGCATCTGAGGCGCTCCCAAAAGTTGCTAAGCTATCTTCTGGGGCAACTGTTGCTGCTGCTATTGTTGAAGCTGAGAATAGTCTTGAAATAGATTTTCAAGATAACAAAGACGAATTGAAAGCAAAACTAAAGGAGGTACTTCGTGAGAAATCTGATGTATTCAATTCACAAAATGCCGGAGAGGATAAGATCAAATTGGGAGAACCAGGCTGGAAAGAGAGATATTATGATGAGAAGTTCTCAGCTAAAACTCCCGAGGAACTTGAAATGATACGGAAAGATGTTGTTTTGAAATACACTGAAGGCTTGTGTTGGGTGATGCACTATTATTACGAAGGTGTTTGTTCTTGGCAATGGTTTTATCCTTATCATTATGCCCCGTTTGCATCTGATCTCAAGGACCTTGGGAGTCTTGATATTAACTTTTCACTGGGTACCCCATTCAAACCTTTTGACCAACTTCTTGGGGTTTTCCCTGCTGCGAGCTCACATGCCCTTCCTCAACCATATAGGAAACTTATGACAGAAGCTGACTCACCAATCATTGATTTTTATCCAGTTGACTTTGAAGTGGACATGAATGGCAAACGCTATTCTTGGCAGGGTATTGCAAAGTTGCCTTTTATTGATGAAGCACGTCTTCTTGCAGAAGTTAAAAAAGTTGAAAAATTGTTAACACCAGAGGAGAAGAGGCGAAATGCTATCATGTTTGACTTGCTTTTCGTAAATTCCTGTCATCCACTTTCTGCATGCATAAGTACACTTGACAACAAATGCAGAAACATGTCCGACAGTGAGCGTGTTGATGTCAAAGAACAAATCAATCCCAAAGAAAGGTATACGTGCAGTGGCGGAATGAATGGTTTTATATCCTTATGTGGTGGAGAGCCTTGCCCTCCTATCTTTAGGTCTCCTGTTGAAGGCATGGAAGATATTATGGACAATCATGTCATATGTGCCATATACAGACTCCCACAGGCGCATAAACACATTACTCGGCCACCACCAGGAGTTAAATTTCCAAAGAAGACTGTGACTCTTGGGGATATGAAACCTGAACCAGTATTATGGCATGAAGATTCTGGTGGGAGACGGGGTGGTGGGGATAATGGGAGGAGAAACCCTCCAGGATCTATTTCTGGTCGAGAGCTTGGAGATGCAGCACACAGATTAGTAGCGAATTCCTTACAAGCAAAAGGTGGCAACAATGGATATCGCTATCCGATTAATGGACCACCTCCATCTTACGCACCACCAATGGCTCACCAAAGATTGCCTCCCTACAATTATGAATCACACCCAGGATACGGTGCCATGCCACCTTCTGTGATGCCTCCACTCCAGGGCCAGCAGCCTTATCGACCTTATGCTACTGTCCCTACCCAACAGTATGGTTATAATCAGCCATATCAGCTGCCTCCCCCGGCAATGTACAATCATCATCATCAACCACCTGGTTCTTATGAAAGAAATAACCACCAACACCCCCCACGATCAAACCATTATGGAAGAAATCATGGTAGTGGGGGAAGTGGGAGGGATGGATACCAACCATCAGGTAATAATCACAATGCCAGGTATCCAAATGCGTCGCAAGGGGCATTTGGTAGTCATCATCAAGATGTTCGACATCATGGCCAAGGTTACCAACCATCTAGACATCACCAGAATTGGGCTCCAAGGAATGACGAAAATGGCCCCAGGGATTATGGGCACCAGCATTCGGCCAATCAATTTTCTTCTTTGGACAGAAGGGGAAACAGGAAGCCAATGCCACCACCTGGTTATAGTCGCAGATAA 3228 0.4405 MGVPAFYRWLAEKYPMVVVDAVEEEPVVIDGIAIPVDTSKKNPNNLEYDNLYLDMNGIIHPCFHPEDRPSPTSFDEVFQCMFDYIDRLFVIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEETRLREEFEREGRKLPPKEESQTFDSNVITPGTEFMAVLSIALQYYVHLRLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLEGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQDKCFLCGQMGHMAADCEGKAKRKAGEFDEKGDPIVVKKPYQFLNIWTLREYLEYEMKIPNPSFEIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFNALGGYLTKGSKPNLDRVEHFIQAVGAYEDRIFQKRARLHQRQAERIKRDKAHSRRGDDAQPQFQPESLVAVSRFHGSRLASAPTPSPFQQSGHHDPSSSGKDHRSASEALPKVAKLSSGATVAAAIVEAENSLEIDFQDNKDELKAKLKEVLREKSDVFNSQNAGEDKIKLGEPGWKERYYDEKFSAKTPEELEMIRKDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGSLDINFSLGTPFKPFDQLLGVFPAASSHALPQPYRKLMTEADSPIIDFYPVDFEVDMNGKRYSWQGIAKLPFIDEARLLAEVKKVEKLLTPEEKRRNAIMFDLLFVNSCHPLSACISTLDNKCRNMSDSERVDVKEQINPKERYTCSGGMNGFISLCGGEPCPPIFRSPVEGMEDIMDNHVICAIYRLPQAHKHITRPPPGVKFPKKTVTLGDMKPEPVLWHEDSGGRRGGGDNGRRNPPGSISGRELGDAAHRLVANSLQAKGGNNGYRYPINGPPPSYAPPMAHQRLPPYNYESHPGYGAMPPSVMPPLQGQQPYRPYATVPTQQYGYNQPYQLPPPAMYNHHHQPPGSYERNNHQHPPRSNHYGRNHGSGGSGRDGYQPSGNNHNARYPNASQGAFGSHHQDVRHHGQGYQPSRHHQNWAPRNDENGPRDYGHQHSANQFSSLDRRGNRKPMPPPGYSRR* 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0881 1075 MobiDBLite consensus disorder prediction 873 909 - -
Amo06g0881 1075 MobiDBLite consensus disorder prediction 829 843 - -
Amo06g0881 1075 PIRSF Exonuclease_Xrn2 1 1043 IPR017151 GO:0004534|GO:0005634|GO:0006139
Amo06g0881 1075 MobiDBLite consensus disorder prediction 825 859 - -
Amo06g0881 1075 Coils Coil 122 142 - -
Amo06g0881 1075 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Amo06g0881 1075 Gene3D - 601 711 - -
Amo06g0881 1075 CDD PIN_XRN1-2-like 51 312 - -
Amo06g0881 1075 MobiDBLite consensus disorder prediction 130 155 - -
Amo06g0881 1075 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Amo06g0881 1075 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Amo06g0881 1075 Coils Coil 505 525 - -
Amo06g0881 1075 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Amo06g0881 1075 MobiDBLite consensus disorder prediction 988 1012 - -
Amo06g0881 1075 MobiDBLite consensus disorder prediction 413 437 - -
Amo06g0881 1075 MobiDBLite consensus disorder prediction 940 1075 - -
Amo06g0881 1075 MobiDBLite consensus disorder prediction 449 483 - -
Amo06g0881 1075 PANTHER 5'-3' EXORIBONUCLEASE 1 1034 - -
Amo06g0881 1075 PANTHER 5'->3' EXORIBONUCLEASE 1 1034 IPR027073 -
Amo06g0881 1075 Pfam Xrn1 helical domain 325 826 IPR041412 -
Amo06g0881 1075 MobiDBLite consensus disorder prediction 130 151 - -
Amo06g0881 1075 MobiDBLite consensus disorder prediction 413 430 - -
Amo06g0881 1075 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Amo06g0881 1075 Gene3D - 1 134 - -
Amo06g0881 1075 Gene3D - 146 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0881 Amo-Chr6 12021222 12029311 Dispersed