Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0876 ATGGCCCTCCTAGCACTCTTGCCTGAACACTCCCTTCCCAACAACAACAATGGTAAGAATAAGATTAATAATAAGCAGAAGCAGAAACACAAGCAGAATCAAAAGCAGAAGCAGAAAGAAAAACAAGGTTCTTCTTCTTCATCTTCATGGGAGCAAATCAAGAACTTGATATCTTGCAAACAAGTTGAAGGGTCAAGAGTGCATGATCCTTCATCGTCAAAGAGCATGATGGGTTCATCTTGCAGCTCCATATGCAGCTTCAGAGATGTTGTTCATGGAAACACTAGAGTTGTTCACAGAGCTGATAACTCTTCACCTGAGAGTAGCTCACTTGGGCAGCAAGAAACTGGTTTGTTGAGTAGAAAACCTGCCGCAAAATCATCAAGAAGGTCATCTGGGAAATCCAATGGTGGAGCAACCTACACGCCATCATCTTCTAAAGGGATGCAGTTTAGGAAGCTGTCTGGGTGTTATGAATGTCACATGATCATTGACCCTAGCAGGCTACCAATTCCAAGGAGCAGCGTGTGTGCTTGTTCAGAGTGTGGAGAGGTGTTCCCTAAGATGGAAAGCTTAGAGCTTCATCAAGCTGTTCGTCATGCTGTTTGGGAGCTGGGTCCAGAGGATTCAGGTCGGAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTAAAGAAGGACAACTCGATATGCAAGATCGAACGGATACTGAAGGTTCAGAACAGTCAACGCACCATCCAACGGTTTGAGGAGTGCAGGGACAGCGTGAAGTCGCGTGCACAGAATAGTAGCAAGAAAAACCCCAGGTGCGCAGCCGATGGCAACGAACTCTTGAGGTTCCATTGCACCACATTGACCTGCCCACTTGGGGCACAGGGATCCACTGCCCTTTGCACTGCCATTCCTGGTTGTGGCGTATGCACTGTCATAAGGCACGGGTTTCAAGGCGGTGGAAAGGGGGTGAAGACCACGGCCAGTAGCGGTAGGGCACATGACTCGCTGGCAGGGCATTGTGGCGCCCCAAGGGCAATGTTGGTTTGCCGTGTCATTGCTGGCAGGGTCAGGCGCGTGCCAGAGGACGCGCCGCCAGAGGACGACGGAGTCTCGGCTAGTGGGGGCTATGATTCTTTTGCAGGCAGTGCCGGGATCTACTCTAACCTTGAAGAGTTGGTTGTTTTCAACCCACGCGCCATCCTACCCTGTTTTGTGGTTGTTTACAAGGTGCTTTCTTGTTGA 1236 0.4935 MALLALLPEHSLPNNNNGKNKINNKQKQKHKQNQKQKQKEKQGSSSSSSWEQIKNLISCKQVEGSRVHDPSSSKSMMGSSCSSICSFRDVVHGNTRVVHRADNSSPESSSLGQQETGLLSRKPAAKSSRRSSGKSNGGATYTPSSSKGMQFRKLSGCYECHMIIDPSRLPIPRSSVCACSECGEVFPKMESLELHQAVRHAVWELGPEDSGRNIVEIIFKSSWLKKDNSICKIERILKVQNSQRTIQRFEECRDSVKSRAQNSSKKNPRCAADGNELLRFHCTTLTCPLGAQGSTALCTAIPGCGVCTVIRHGFQGGGKGVKTTASSGRAHDSLAGHCGAPRAMLVCRVIAGRVRRVPEDAPPEDDGVSASGGYDSFAGSAGIYSNLEELVVFNPRAILPCFVVVYKVLSC* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0876 411 Gene3D - 202 408 - -
Amo06g0876 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 177 201 IPR013087 -
Amo06g0876 411 SUPERFAMILY ADP-ribosylation 202 407 - -
Amo06g0876 411 Coils Coil 22 42 - -
Amo06g0876 411 ProSitePatterns Zinc finger C2H2 type domain signature. 177 200 IPR013087 -
Amo06g0876 411 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 33 410 - -
Amo06g0876 411 MobiDBLite consensus disorder prediction 1 50 - -
Amo06g0876 411 MobiDBLite consensus disorder prediction 60 79 - -
Amo06g0876 411 MobiDBLite consensus disorder prediction 99 147 - -
Amo06g0876 411 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 33 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0876 Amo-Chr6 11974783 11978291 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo06g0876 None None None