Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0866 ATGAGAGAGATTCTTCACGTTCAAGGAGGTCAATGCGGGAACCAGATCGGTTCCAAGTTCTGGGAAGTCATCTGCGACGAGCACGGCATCGATCCCACCGGCAAGCACCAGGCCCCGGCCGACGCCAACGACGCCGCCCTCTCCGACCTCCAGCTTGAGCGCATCAACGTCTACTACAATGAGGCTTCAGGAGGCAGGTTCGTCCCCAGGGCTGTTCTCATGGATCTTGAGCCCGGAACCATGGACAGCATCAGATCCGGTCCATTCGGTAAGGTCTTCCGTCCGGATAACTTCGTTTTCGGACAGTCCGGCGCCGGTAACAACTGGGCGAAAGGTCATTACACTGAAGGCGCTGAGTTAATCGATTCCGTTCTCGATGTTGTTCGCAAAGAAGCCGAGAACTGCGACTGCTTGCAAGGTTTCCAAGTTTGTCACTCACTTGGAGGAGGCACGGGTTCTGGCATGGGAACACTCTTAATATCCAAGATCAGAGAAGAGTATCCAGACAGAATGATGCTCACGTTCTCCGTTTTCCCCTCACCAAAGGTATCTGACACCGTTGTAGAGCCATACAATGCTACATTATCCGTTCACCAACTCGTGGAGAACGCAGATGAATGCATGGTTCTTGACAATGAAGCACTTTATGACATCTGCTTCAGGACTCTCAAACTCACCACTCCTAGTTTTGGCGATCTGAACCATCTGATTTCTGCAACTATGAGCGGTGTGACCTGTTGCTTGAGGTTCCCTGGACAACTGAATTCTGACCTGAGGAAGCTGGCCGTGAACCTTATCCCATTCCCTCGTCTCCACTTCTTCATGGTGGGGTTTGCACCTCTCACCTCTCGCGGCTCTCAGCAGTACGTCTCCCTCACCGTCCCAGAACTCACACAGCAAATGTGGGACGCCAAGAATATGATGTGCGCCGCTGATCCCCGCCACGGTCGGTACCTCACCGCATCAGCCATGTTCAGGGGAAAGATGAGTACAAAAGAGGTGGATGAACAAATGATCAATGTGCAGAATAAGAACTCCTCGTACTTCGTTGAGTGGATCCCCAACAACGTGAAGTCCAGTGTGTGTGACATCCCACCCAAGAATCTGAAGATGGCATGCACTTTCATCGGTAACTCGACATCGATTCAAGAGATGTTCAGGAGAGTGAGCGAGCAGTTCACTGCAATGTTCCGCCGAAAAGCTTTCTTGCACTGGTACACAGGTGAGGGAATGGACGAGATGGAGTTCACAGAGGCAGAGAGCAACATGAACGATTTAGTGGCAGAGTACCAGCAATACCAGGATGCAACTGTGGAGGAGGATGAGGAGGAGTATGGTGAAGAGGGTGAAGAACAGGTTTATGAGGAGCAGTAG 1374 0.5167 MREILHVQGGQCGNQIGSKFWEVICDEHGIDPTGKHQAPADANDAALSDLQLERINVYYNEASGGRFVPRAVLMDLEPGTMDSIRSGPFGKVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYVSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKNLKMACTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATVEEDEEEYGEEGEEQVYEEQ* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0866 457 PRINTS Beta-tubulin signature 49 66 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Amo06g0866 457 PRINTS Beta-tubulin signature 96 107 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Amo06g0866 457 PRINTS Beta-tubulin signature 116 134 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Amo06g0866 457 PRINTS Beta-tubulin signature 160 172 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Amo06g0866 457 PRINTS Beta-tubulin signature 220 232 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Amo06g0866 457 PRINTS Beta-tubulin signature 238 247 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Amo06g0866 457 PRINTS Beta-tubulin signature 253 266 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Amo06g0866 457 PRINTS Beta-tubulin signature 273 289 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Amo06g0866 457 PRINTS Beta-tubulin signature 319 337 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Amo06g0866 457 PRINTS Beta-tubulin signature 337 351 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Amo06g0866 457 PRINTS Beta-tubulin signature 355 378 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Amo06g0866 457 PRINTS Beta-tubulin signature 385 396 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Amo06g0866 457 PRINTS Beta-tubulin signature 420 438 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Amo06g0866 457 Gene3D Helix hairpin bin 382 438 IPR023123 -
Amo06g0866 457 CDD beta_tubulin 2 434 - -
Amo06g0866 457 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Amo06g0866 457 PRINTS Tubulin signature 59 78 IPR000217 GO:0005874|GO:0007017
Amo06g0866 457 PRINTS Tubulin signature 101 112 IPR000217 GO:0005874|GO:0007017
Amo06g0866 457 PRINTS Tubulin signature 114 138 IPR000217 GO:0005874|GO:0007017
Amo06g0866 457 PRINTS Tubulin signature 140 158 IPR000217 GO:0005874|GO:0007017
Amo06g0866 457 PRINTS Tubulin signature 159 180 IPR000217 GO:0005874|GO:0007017
Amo06g0866 457 PRINTS Tubulin signature 184 197 IPR000217 GO:0005874|GO:0007017
Amo06g0866 457 PRINTS Tubulin signature 198 218 IPR000217 GO:0005874|GO:0007017
Amo06g0866 457 PRINTS Tubulin signature 378 406 IPR000217 GO:0005874|GO:0007017
Amo06g0866 457 PANTHER TUBULIN BETA-1 CHAIN-RELATED 1 448 - -
Amo06g0866 457 MobiDBLite consensus disorder prediction 436 457 - -
Amo06g0866 457 Pfam Tubulin C-terminal domain 269 390 IPR018316 -
Amo06g0866 457 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Amo06g0866 457 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 148 154 IPR017975 GO:0005525|GO:0005874|GO:0007017
Amo06g0866 457 Gene3D Tubulin/FtsZ, GTPase domain 1 270 IPR036525 -
Amo06g0866 457 PANTHER TUBULIN 1 448 IPR000217 GO:0005874|GO:0007017
Amo06g0866 457 SMART Tubulin_4 55 252 IPR003008 GO:0005525
Amo06g0866 457 SUPERFAMILY Tubulin C-terminal domain-like 252 437 IPR008280 -
Amo06g0866 457 Gene3D - 271 381 IPR037103 -
Amo06g0866 457 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 251 IPR036525 -
Amo06g0866 457 SMART Tubulin_C_4 254 391 IPR018316 -
Amo06g0866 457 Coils Coil 416 436 - -
Amo06g0866 457 Pfam Tubulin/FtsZ family, GTPase domain 3 219 IPR003008 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0866 Amo-Chr6 11905351 11909094 Wgd