Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0857 AATCCAACAATGGAAGAACTGGAGCTTGCTTCTTCAGGTTCTCGTTTGGAAAAAGGACAAACAACATCATCTTTTAAGATGGATCAACAAAAAGATTCAAAATCAAACCAAATGGAGAGTGTTTCCTTCTTTGGCTTGTTTGCTGCAGCTGATTCAGTTGACTATGTGTTAATGTTCCTAGGAAGTGTTGGTGCTTGTGTTCATGGTGCTGCTCTGCCTCTCTTCTTTGTTTTGTTTGGTCGCATGATTGATTCTTTGGGACATCTTAATAGGGATCCTCACAAATTGTCATCACGGGTTTCTGAGCATGCTTTGTACTTGGTATATCTTGGACTTCTTGTTATGGTATCAGCTTGGATGGGTGTTGCATTCTGGATGCAAACCGGTGAGAGGCAAACGGCTCGGTTGCGCTTAAATTACTTGAGGTCAGTGCTAAAGAAGGACATTAATTTCTTTGACAATGAAGCCAGAGATGCTAATATCATTTTCCACATCTCAAGTGATGCAATTTTGGTACAAGATGCAATAGGCGACAAGACAGGCCATGCCATACGTTACCTATCTCAATTCATTGTTGGATTTGGCATTGGATTCACATCAGTGTGGCAGCTCACACTACTCACCTTGGCTGTTGTTCCATTGATAGCTGTAGCAGGAGGAGCTTATACAATTATTATGTCTACTCTCTCAGAAAAGGGTGAAGCAGCATATGCTGAAGCTGGCAAGGTGGCAGAAGAGGCAATATCTCAAGTGCGCACCGTTTACTCATTTGTAGGAGAAGAGAAAGCAGTTGGCACATACTCTAAGTCACTTGACAAAGCTCTTAAGATGGGGAAGAAGAGTGGTTTTGCAAAAGGAATTGGTGTTGGTTTTACGTATGGCCTATTGTTTTGTGCTTGGGCATTGCTTCTATGGTATTCTAGCATACTTGTGAGGCATCACAAGACAAATGGAGGGAAAGCATTTACAACTATCATCAATGTCATCTTTAGTGGATTTGCGCTTGGCCAAGCTGCTCCAAGCCTTGGTTCCATTGCTAAAGGGCGTGCTGCCGCAGCGAATATCATGAACATGATTGCGTCTGCTTCGGACGTGGCAAAAAGGTTGGATGACGGCACTGTTCTGCAACAAGTGGAAGGGAAAATTGAATTCTCTGAGGTCTGCTTTGCTTACCCTTCAAGGTCCAATATGGTCTTTGAAAATTTGAGCTTCTTAGTCAGTGCTGGGAAGACTATAGCAGTTGTTGGTCCTAGTGGTTCAGGAAAGAGCACAATCATTTCCATGATTCAACGATTTTATGATCCTACTTCAGGTAAGATCCTGTTGGATGGATATGACTTAAAGAATCTTCAATTGAAATGGTTGAGAGAACAGATGGGACTGGTAAGTCAAGAACCAGCACTATTTGCCACAACAATAGCTGGCAACATTTTATTTGGAAAAGAAGGTGCTGACATGGATCAGATCATACAAGCTGCCAAGGCTGCAAATGCTCATTCCTTCATTGAAGGATTACCTGATGGTTATAATACTCAGGTTGGAGAAGGTGGCACCCAACTTTCTGGAGGACAGAAGCAGAGAATTGCTATAGCTAGAGCAGTTCTCAGAAACCCAAAAATATTGCTTTTAGATGAAGCCACCAGTGCTTTAGATGCTGAATCAGAACTCATAGTGCAGCAGGCATTGGAAAAAATAATGTCAAACCGGACAACAATAATTGTTGCGCATAGATTATCTACCATACGCGATGTAGATACAATTATTGTGTTGAAGAATGGTCAAGTTGCTGAGAGTGGTACTCATTCAGAACTGATGCTGAAAAATGGGGATTATGTGAGTCTGGTGAGCATCCAGGAATCACAGAATTTCACACACTCTAGCTCAATATCACGCTCTGGAAGTTCAAGGAACTCCAGCTTTAGAGAACCTTTTGACAGTAGGAACTATCAAGATGTGAACACAGAAAGAGAGCTTCAGTCAAGTGATCAAGGCATGCCATTGAATGCGGCTTCTGTTCCGTCCATTTTGGACTTACTGAGACTGAATGCTCCAGAGTGGCCTTATGCAGCACTTGGTTCCATTGGTGCCATTCTGGCTGGAATGGAGGCTCCTCTCTTTGCCCTTGGAATCACACATATTCTGACTGTATTTTACTCTGGTTCTAAAATCAAGCAAGAAGTTGATCGGATAGCGATAGCATTTGTCGGATTGGCTGTTATAACTATACCTATTTACCTATTGCAACATTACTTTTATACTCTGATGGGAGAGCGCCTCACCGCCCGTGTGCGCTTATTAATGTTCTCAGCTATCCTTACAAATGAGATCGCATGGTTCGACATGGATGAGAACAACACTGGTTCAATAACAGCCATGCTAGCTGCAGATGCAACATTAGTAAGAAGTGCTCTAGCTGACAGAATCTCTACCATTGTGCAAAATGTAGCTCTCACCGCAACAGCATTTGCCATTGCCTTCACACTCAGTTGGAAACTCACTTGTGTGGTTGTAGCATGCCTCCCCCTACTCATAGGGGCTTCTATCACAGAGCAACTGTTTCTCAAGGGATTTGGAGGAGACTATAGTCATGCATACTCTAGAGCAATTTCTTTGGCAAGGGAAGCTATTGCCAACATACGTACCGTGGCTGCTTTTGGAGCAGAAGATCGTATCTCAATTCAGTTTTCCTGTGAGTTGAACAAGCCCAACAAGCAAGCACTTTTAAGAGGCCACATATCAGGTATCGGCTATGGTGTTACACAGCTGTTTGCTTTCTGTTCCTATGCGCTTGGACTTTGGTATGCATCCCTTTTAATCAAGCAGAAGGACTCAAATTTCGGAGATGTCATGAAATCTTTCATGATCTTGATCATCACTGCTCTGGCAATAGCAGAAACACTAGCTCTTACCCCAGACATCGTGAAGGGATCGCAAGCGTTAGGATCAGTTTTCAGCATTCTCCAAAGGAAAACAGCAATAAGCCCCGACAACCCCAACTCCAAGATGGTAACGGATATCAAAGGAGATATAGAGTTTAGAAATGTGTGCTTCAACTATCCAATGAGACCTGATATCCCCATATTTCAGAACTTAAATCTCAAAGTCTCCGCAGGAAAGAGTCTTGCAGTAGTAGGACAAAGTGGTTCGGGGAAGAGTACTGTGATTTCTCTGGTAATGAGATTTTATGACCCCATTTCTGGGTCTGTTCTAATCGATGAATCCGATATCAGAAGCCTAAACTTGAGATCCTTAAGGCTGAGAATAGGATTGGTTCAGCAAGAGCCAGCTTTGTTTTCGACTACACTTTACGAAAACATCAAGTATGGAACTGAGGAGGCATCAGAGATAGAGGTAATGAAAGCAGCAAGAGCAGCTAATGCTCATGAATTCATTAGTAGAATGCCAGATGGGTACAGAACTCAAGTTGGTGAAAGAGGGGTGCAGTTATCAGGAGGACAGAAACAAAGAGTGGCTATTGCTAGAGCTATTCTGAAGAATCCATCCATTCTTCTATTGGATGAGGCGACAAGTGCGCTTGACACGGTGTCAGAGAGGCTTGTCCAAGAGGCTCTTGATAAACTTATGGAAGGAAGAACTACAATTTTGGTAGCTCACAGGTTGTCAACTGTTAGAGATGCAAACAACATTGCAGTGCTACAAAATGGGAGGGTTGCTGAAATGGGGAGCCATCAGAGGCTGATTTCAAAACCAGGAAGCATCTACAAGCAATTGGTTAGTCTACAGCAAGAGAAGCATGGCCAAGGCCATTAA 3771 0.4296 NPTMEELELASSGSRLEKGQTTSSFKMDQQKDSKSNQMESVSFFGLFAAADSVDYVLMFLGSVGACVHGAALPLFFVLFGRMIDSLGHLNRDPHKLSSRVSEHALYLVYLGLLVMVSAWMGVAFWMQTGERQTARLRLNYLRSVLKKDINFFDNEARDANIIFHISSDAILVQDAIGDKTGHAIRYLSQFIVGFGIGFTSVWQLTLLTLAVVPLIAVAGGAYTIIMSTLSEKGEAAYAEAGKVAEEAISQVRTVYSFVGEEKAVGTYSKSLDKALKMGKKSGFAKGIGVGFTYGLLFCAWALLLWYSSILVRHHKTNGGKAFTTIINVIFSGFALGQAAPSLGSIAKGRAAAANIMNMIASASDVAKRLDDGTVLQQVEGKIEFSEVCFAYPSRSNMVFENLSFLVSAGKTIAVVGPSGSGKSTIISMIQRFYDPTSGKILLDGYDLKNLQLKWLREQMGLVSQEPALFATTIAGNILFGKEGADMDQIIQAAKAANAHSFIEGLPDGYNTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQQALEKIMSNRTTIIVAHRLSTIRDVDTIIVLKNGQVAESGTHSELMLKNGDYVSLVSIQESQNFTHSSSISRSGSSRNSSFREPFDSRNYQDVNTERELQSSDQGMPLNAASVPSILDLLRLNAPEWPYAALGSIGAILAGMEAPLFALGITHILTVFYSGSKIKQEVDRIAIAFVGLAVITIPIYLLQHYFYTLMGERLTARVRLLMFSAILTNEIAWFDMDENNTGSITAMLAADATLVRSALADRISTIVQNVALTATAFAIAFTLSWKLTCVVVACLPLLIGASITEQLFLKGFGGDYSHAYSRAISLAREAIANIRTVAAFGAEDRISIQFSCELNKPNKQALLRGHISGIGYGVTQLFAFCSYALGLWYASLLIKQKDSNFGDVMKSFMILIITALAIAETLALTPDIVKGSQALGSVFSILQRKTAISPDNPNSKMVTDIKGDIEFRNVCFNYPMRPDIPIFQNLNLKVSAGKSLAVVGQSGSGKSTVISLVMRFYDPISGSVLIDESDIRSLNLRSLRLRIGLVQQEPALFSTTLYENIKYGTEEASEIEVMKAARAANAHEFISRMPDGYRTQVGERGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTVSERLVQEALDKLMEGRTTILVAHRLSTVRDANNIAVLQNGRVAEMGSHQRLISKPGSIYKQLVSLQQEKHGQGH* 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0857 1256 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 464 580 IPR039421 -
Amo06g0857 1256 Pfam ABC transporter 400 548 IPR003439 GO:0005524
Amo06g0857 1256 CDD ABC_6TM_Pgp_ABCB1_D2_like 679 993 - -
Amo06g0857 1256 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 41 483 IPR039421 -
Amo06g0857 1256 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 560 1248 IPR039421 -
Amo06g0857 1256 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1010 1246 IPR003439 GO:0005524
Amo06g0857 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 618 IPR027417 -
Amo06g0857 1256 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 382 617 IPR003439 GO:0005524
Amo06g0857 1256 MobiDBLite consensus disorder prediction 1 32 - -
Amo06g0857 1256 ProSitePatterns ABC transporters family signature. 520 534 IPR017871 GO:0005524
Amo06g0857 1256 Gene3D - 1000 1255 IPR027417 -
Amo06g0857 1256 CDD ABC_6TM_Pgp_ABCB1_D1_like 58 355 - -
Amo06g0857 1256 SMART AAA_5 1037 1223 IPR003593 -
Amo06g0857 1256 SMART AAA_5 408 594 IPR003593 -
Amo06g0857 1256 Gene3D - 372 619 IPR027417 -
Amo06g0857 1256 CDD ABC_MTABC3_MDL1_MDL2 382 618 - -
Amo06g0857 1256 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 59 347 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo06g0857 1256 Gene3D ABC transporter type 1, transmembrane domain 45 979 IPR036640 GO:0005524|GO:0016021
Amo06g0857 1256 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 690 975 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo06g0857 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 999 1248 IPR027417 -
Amo06g0857 1256 Pfam ABC transporter 1029 1177 IPR003439 GO:0005524
Amo06g0857 1256 SUPERFAMILY ABC transporter transmembrane region 52 355 IPR036640 GO:0005524|GO:0016021
Amo06g0857 1256 MobiDBLite consensus disorder prediction 625 646 - -
Amo06g0857 1256 CDD ABC_MTABC3_MDL1_MDL2 1010 1248 - -
Amo06g0857 1256 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 560 1248 - -
Amo06g0857 1256 SUPERFAMILY ABC transporter transmembrane region 678 989 IPR036640 GO:0005524|GO:0016021
Amo06g0857 1256 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 41 483 - -
Amo06g0857 1256 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 464 580 - -
Amo06g0857 1256 Pfam ABC transporter transmembrane region 694 961 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo06g0857 1256 Pfam ABC transporter transmembrane region 59 331 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo06g0857 1256 ProSitePatterns ABC transporters family signature. 1149 1163 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0857 Amo-Chr6 11821685 11827244 Dispersed/Wgd