Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0736 ATGGCAGTGGAGAGTTCACAGGATTTGTTGAAGAAGCTCGAGTACTTGTCTCTCGTTTCGAAGGTTTGCACAGAAATGGAATCTCACACCGGAAACGCTGATAAGGTACTTGCTGAGTTCATCACCGAGTTGGGTCGAACTTCCGAGAACGTCGAAGAATTCGATGCGAAACTGAAGGAGAACGGTGCCGAGTTGCCCGATTATTTTGTCCGTACACTTCTCAAGATAATCCACGCTATTCTCCCTCCGAAGAAGGGTTCCGACAACGGCGACAGCAAGGGTTCGAAGCGGGACGGTGGTGATTCCAAGGGGAAGTTCAAGGCACAGGCTATTGTGGATGATAGGGACAGGGTTAAGGAGCTGCAGAAGGAGATTCAAGCTGAAGCCAAAGAAGAACAAGGTGGTGACAGAGACAGAGAGATAAACGGTGAAGATGGGGACAGAGAAACAGACAGAGGTAGAAGGGAAAGAATTAGCAGAAGGGACAGGTATGATAAATATGATAGAGATGAAAGGTATAGTGATAGAGATAGGAGTAGAAATATAGATATAGATAGAGATAGAGATAGAGATAGAGATAGAGATAGAGATAGAGATAAAGATAGAGATTATGATGATGAAAGAAAGGATTCTAGGAGAAGGGGAAGGGATAGAGATATTGATAGTGATAGTGGTAGCGATAATGATAAGGATAGATATGAGAGGCGGAGGTTAGATGGGTATGAAGATGAAAATGGTGGTTATGGCGAAGAAGATGATGGTGGTGGCTGTGGTGTTGAGAGGAAAGGTTGGAGGGAACCGATACATGGTGGGGGTGGTGAAGTTGAGTTGTATAAGATTTATAAAGGGAGGGTTTCAAGGGTGATGGATACGGGTTGCTTTGTTCAGTTGGAWGACGWTAGAGGGAAGGAAGGAYTGGTGCATGTTTCGCAGATTGCAACTAAGAGGATTAGTAATGCGAAGGATGTGGTGAAGCGGGATCAGGAGGTTTATGTGAAGGTAATATCTGTTTCTGGTCACAAGTTGAGTCTGTCAATGAGGGATGTTGATCAGCATACTGGCAAAGATCTTCYGTTGAAGAAAAGTGATGAGGACACATTTYGGATTCAGGATTTAAAGGATGGGGCAGTTGCAAGGACGGGTCTSTCAGGTATCGGGATTGTGGAGGAGGATGATATGGGTAAATCACGGAGGCCTTTGAAGAGGATGAGCTCTCCTGAGAGATGGGAGGCAAAGCAGTTGATTGCTTCAGGTGTTTTGAGTGTTTCAGAGTACCCAACTTATGACGAGGAGGAGGATGGGCTGATGTAYGAGGAGGAAGGTGCTGAGGAGGAGCTTGAGATTGAGTTGAATGAGGATGAACCGRCATTTTTGCAAGGGCAGAGCAGGCATAAAATGGATACATCTCCTGTCAAGATTTTCAAAAATCCAGAGGGTTCTCTTGGTCGTGCTGCTGCCCTCCAGTCTGCACTTATAAAGGAGCGTAGAGAAGTACGAGAACAGCAGCAGCGCACCATGCTTGATTCTATTCCAAAGGATCTCAATCGTCCTTGGGAAGACCCTATGCCAGAGTCTGGTGAAAGGCATCTTGCTCAGGAGCTTAGGGGTGTTGGTTTGTCAGCCTATGATATGCCAGAATGGAAGAAGGATGCTTATGGGAAGACCATTACTTTTGGGCAAAGGTCAAAGCTTTCTATTCAAGAACAGAGGCAGAGTCTCCCAATTTACAAGTTAAAAAAAGAATTGATTCAGGCTGTCCATGATAATCAGGTGTTGGTGGTAATTGGTGAAACAGGCTCAGGCAAAACTACTCAGATCACACAGTATCTTGCTGAAGCAGGTTACACCACAAGAGGTAAAATTGGATGCACTCAACCTCGTAGGGTGGCTGCAACGTCAGTTGCAAAGAGAGTGGCAGAAGAGTTTGGATGTCGATTGGGAGAAGAAGTTGGTTATGCCATTCGGTTTGAAGATTCTACGGGACCAGATACTGTAATCAAGTACATGACCGAAGGTATGCTTCTTAGGGAAATACTGGCTGATGAGAATCTCTCACGGTATTCTGTCATAATGCTTGATGAAGCCCATGAAAGGACCATTAATACTGATGTTCTTTTTGGACTGCTTAAGCAGCTAGTGCAGCGTAGACCTGAGTTGCGATTGATTGTCACATCTGCCACTCTGGATGCAGAGAAGTTCTCAGGATATTTCTTTAACTGTAACATCTTTACAATACCCGGGAGAACTTTCCCTGTGGAGATTCTTTATAGTAAGCAGCCAGAAAGTGATTACTTAGATGCAGCTTTAATCACTGTCCTACAGATCCACTTGACAGAACCTGAAGGAGACATTCTTCTCTTCTTGACTGGCCAAGAGGAGATTGATTTTGCTTGTCAATCTCTCTACGAAAGAATGAAGGGATTAGGTAAGAATGTTCCAGAACTGATAATATTACCTGTTTATAGTGCCCTTCCTAGTGAAATGCAGTCTAGGATATTTGACCCTGCTCCTCCCGGGAAAAGGAAAGTGGTTGTGGCAACTAACATTGCTGAGGCTTCTTTGACTATTGATGGGATATTTTACGTTATTGATCCTGGGTTTGCAAAGCAAAATGTTTATAACCCAAAACAAGGACTTGATTCATTGGTGATAACTCCGATATCACAAGCTTCAGCCAAACAAAGAGCTGGACGTGCAGGGCGTACTGGACCTGGAAAATGCTATCGCCTATATACCGAGAGCGCATATAGGAATGAGATGCCTCCCACTACGATTCCTGAGATTCAAAGGATAAATCTTGCAATGACTACTCTCAACATGAAAGCTATGGGAATAAATGATCTTTTGTCCTTTGATTTTATGGATCCACCATCATCCCAAGCTATTATTTCAGCCATGGAACAGCTCTATAGTCTTGGAGCATTGGATGAAGAGGGCCTATTAACCAAATTGGGGAGGAAAATGGCAGAATTTCCCTTGGATCCACCTTTGTCTAAGATGTTACTTGCCAGTGTGGACCTTGGATGTAGTGATGAGATATTGACGATAATTTCCATGATTCAGACTGGCAATATTTTTTACAGGCCTAGGGAAAAGCAAGCCCAAGCAGATCAGAAGAGGGCAAAGTTTTTCCAGCCTGAAGGTGACCATCTCACACTGCTTGCTGTTTATGAGGCTTGGAAAGCCAAGAATTTTTCGGGACCATGGTGTTTTGAGAACTTTGTTCAATCTCCATCATTGAGGAGAGCACAGGATGTCAGGAAACAGCTTCTCACCATCATGGATAAGTACAAATTGGATGTTGTAAGTGCTGGAAAAAATTTTACCAAGATCAGGAAGGCGATCACTGCAGGATTCTTTTTCCATGCAGCAAGGAAGGATCCCCAGGAAGGCTACAGAACCCTTGTTGAGAACCAGCCTGTATATATCCATCCAAGTTCAWCTTTGTTCCRGAGACAACCTRGTTGGGTCATCTACCATGAACTTGTTATGACTACTAAGGAATATATGCGTGAGGTCATAGTGATAGATCCTAAATGGCTTGTTGAATTGGCCCCAAGATTCTTCAAAGTATCAGATCCTACAAAGATGAGCAAGCGAAAGCGTCAAGAGCGGATTGAACCACTYTATGACAGATATCAKGAGCCAAATTCATGGCGTTTGAGTAAACGCCGTGCTTGA 3681 0.4385 MAVESSQDLLKKLEYLSLVSKVCTEMESHTGNADKVLAEFITELGRTSENVEEFDAKLKENGAELPDYFVRTLLKIIHAILPPKKGSDNGDSKGSKRDGGDSKGKFKAQAIVDDRDRVKELQKEIQAEAKEEQGGDRDREINGEDGDRETDRGRRERISRRDRYDKYDRDERYSDRDRSRNIDIDRDRDRDRDRDRDRDKDRDYDDERKDSRRRGRDRDIDSDSGSDNDKDRYERRRLDGYEDENGGYGEEDDGGGCGVERKGWREPIHGGGGEVELYKIYKGRVSRVMDTGCFVQLXDXRGKEGLVHVSQIATKRISNAKDVVKRDQEVYVKVISVSGHKLSLSMRDVDQHTGKDLXLKKSDEDTFXIQDLKDGAVARTGLSGIGIVEEDDMGKSRRPLKRMSSPERWEAKQLIASGVLSVSEYPTYDEEEDGLMYEEEGAEEELEIELNEDEPXFLQGQSRHKMDTSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQITQYLAEAGYTTRGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDSTGPDTVIKYMTEGMLLREILADENLSRYSVIMLDEAHERTINTDVLFGLLKQLVQRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYSKQPESDYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMPPTTIPEIQRINLAMTTLNMKAMGINDLLSFDFMDPPSSQAIISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIISMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSPSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSXLFXRQPXWVIYHELVMTTKEYMREVIVIDPKWLVELAPRFFKVSDPTKMSKRKRQERIEPLYDRYXEPNSWRLSKRRA* 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0736 1226 CDD DEXHc_DHX8 568 746 IPR044762 GO:0000398|GO:0003724|GO:0005524
Amo06g0736 1226 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 688 697 IPR002464 -
Amo06g0736 1226 PANTHER - 214 1226 - -
Amo06g0736 1226 Gene3D - 948 1046 - -
Amo06g0736 1226 Coils Coil 484 504 - -
Amo06g0736 1226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 563 1097 IPR027417 -
Amo06g0736 1226 MobiDBLite consensus disorder prediction 89 244 - -
Amo06g0736 1226 PANTHER ATP-DEPENDENT RNA HELICASE 214 1226 - -
Amo06g0736 1226 SMART helicmild6 799 903 IPR001650 -
Amo06g0736 1226 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 764 944 IPR001650 -
Amo06g0736 1226 Coils Coil 111 131 - -
Amo06g0736 1226 Pfam Helicase associated domain (HA2) 965 1053 IPR007502 GO:0004386
Amo06g0736 1226 SMART ha2_5 964 1054 IPR007502 GO:0004386
Amo06g0736 1226 SUPERFAMILY Nucleic acid-binding proteins 277 354 IPR012340 -
Amo06g0736 1226 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 583 746 IPR014001 -
Amo06g0736 1226 Pfam DEAD/DEAH box helicase 579 729 IPR011545 GO:0003676|GO:0005524
Amo06g0736 1226 CDD SF2_C_RHA 750 911 - -
Amo06g0736 1226 Pfam S1 RNA binding domain 279 339 IPR003029 GO:0003676
Amo06g0736 1226 CDD S1_DHX8_helicase 278 354 - -
Amo06g0736 1226 Gene3D - 272 358 IPR012340 -
Amo06g0736 1226 ProSiteProfiles S1 domain profile. 278 347 IPR003029 GO:0003676
Amo06g0736 1226 SMART ultradead3 571 755 IPR014001 -
Amo06g0736 1226 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1111 1186 IPR011709 -
Amo06g0736 1226 Gene3D - 749 922 IPR027417 -
Amo06g0736 1226 Pfam Helicase conserved C-terminal domain 771 903 IPR001650 -
Amo06g0736 1226 Gene3D - 545 748 IPR027417 -
Amo06g0736 1226 SMART S1_6 276 347 IPR022967 -
Amo06g0736 1226 MobiDBLite consensus disorder prediction 82 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0736 Amo-Chr6 10451157 10455768 Dispersed/Transposed