Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0728 ATGGATGGYGGGGATGTTAGGGCTGGGGGAAAGAAGAAGAGACCTAAGCCTGTGGAAATTGGATTTGATTCGGATGATGATGAGCCGATTGGCTCTATGTTTAAGCTGAGGAAGTCACGTGGGTCTAAGAAGAAGGTTGGTTCTGCGGCTTCTGAGGGGTCTTGTGGCGATGGGGCCAAGAATGTCGATGCTGTGACAAGAAAGTTGGTTGATGCAAAGGATGATTTGGTGGGAGGTATGGATGATACCTTGGCGAGTTTTAGGAAGAGGTTGAAGGGATCTGGAGCCACCAGAGCAACTAGTTCCGTGTTGAATGCAACYGTGGAGTCTTCTGACAGGTCTCTTGATCTTTCTGTTGACGGAATTGAGGGTCATGTTGCGTCTGACGATGATGTGGTAGCTCGCGGATCTGTGAGAGSCTCCAAGGATGAGAAAGGGGTGAATTTATCCGTTGGTGACCGCTTGCAGCYTTCTTCTGATGAGAAWATGGAAGATTCATTATCAGCYATTTTCCGAAAGGCACAATCTAGTTCTGTTAGGAAATTCCGAGGCTCTTCAGGTTCAAGGAAGAAGAAAGAGAGTCACAATGGGGATAATAAAAAGCATGGGGATGGCTGTTTTCTGGTGGAAGTCACTGAAGGTATTTGTCATTCTAACATATTAGATGTCTGCAATGAAGATAGACAACAGTTGTCTTCTATTCAATCTGAAAATTTTCGTTGTGCTTCTGACCAAGAAAGAATCCTCAATGATGCTTTAAAGCAGTGTTCTTCCATGTCACATGACGTTGAAATGATTGATAATGGCTCTCTCTCWAAAGTAGTGGAAGGGGTATCTGGTACRGAGGGRGAGGTGAAGAATAAACTGACTGATGAACTAGCTCCAGTTTGTAATTTTGGTTCAGAACATGGCRGCACGTCTATGAAGAAAGAAAATTTCTTACCTCCTTGTGACACTGAGCCCTTGGTTAAATCAACCGGAAATATATCGAATGAGAATAATTATATMGTTACTGGAAAAGTTTTCTCTGGATGCCAGGTGGAGGTAGATGAAGGTGTAAAATCTGAAACCGAYGTRGTTTCGGATAAAGATTGTTGTGACTATAATGGTTTAAATACAAAGCCTGATGTTAAAGATTTAGTTCTAGGTATTTCACTTGAAAAAAATGATGTAACTGCCTCTGGTAGCTTATCTCCTAAYATGTCTGTGGAAGCCAATGAATCTGAATTAGATGTRCTGTCAAATCACTCGAAGAAACCTTTAGAAGTGTATAGTGCTTCAATTCTGAAATGCAACTCCATGTTAGATCCGGTTCAATCTGATGGATCCTCCCTTCCATCTGCACCAGATGAAAATGAGAATAATGCAGAATATAATGATTCTCTCTCTGATTTTGCCTACAAAGACAGTAAAATTCGTGCTGTGCGAAAGGCTAAAATGCATAAGCATGGAGATATGACTTATGAGGGTGATGCTGATTGGGAGAATTTAACAAATGATCAAGCTCTTAATGAAAACCATGCTGCTGAAGATTCTGAAAGTGTTGCAGTAGTTGCTGTATCAGCTGGGCTGAGAGCCCATGCYGCTGGTCCAATGGAGAAAATAAAGTTTAAGGAGATGTTGAAGCGRAAAGGTGGTCTCAAAGAATATTTGGCTTGCAGAAATCAGATCTTAAGTCTTTGGAGTAGAGATGTTACGCGTGTTTTGCCTCTTGCTGAATGTGGAGTTAGTGATGCTCAATCTGAGYATAAAAGTCCTCGTTCATCTCTTACTAGGGATGTCTACACATTTCTCGARCAATGTGGTTATATAAACATTGGTATTGCTTCTCAWAAGGATGTTGGAAGTAGTGCAATGCATTCTTATAAACTTGTGAAAGAAAAAGGTTTTGAGGAAAGCTCCACTGCTTCAATTGCTGACTCTGAAGAGGGAGTATCATTTATTGTTGGTCAYACTAAAATGTCAGATGTGTCCATGGAGAATAACCATGGCCTTAAAYGGGAGGATGAAGACYTACCAGCTGAAGCTACAGAAGGCAGGAARGCAGCAACYATAAATTTATTAAACKCAAAACAACCTAAAGGAGAAAATTTTGATTCCCAAGATAATGATGAGATTCAGGAAGGACTTYGTGGAACTAGACATGTCAATATAAACAATGTTGTTCCTTCCTCCAAATTTCCTGATTGCAGACTGGCTTCTGCTGTAGCTACAGAACAGAGCAATGAATCTATCTGTGTTAAAACCGTCTCGGCTGATCGCATAGGTGATCAAATGTTGTCTGATTCTGAGGCTAGAAAGAGAGTTATTGTCATTGGAGCTGGTCCTTCTGGGCTAACTGCTGCTCGTCACTTGCAACGTCAGGGGTTGACTGTGACTGTACTCGAGGCAAGGAATAGGATAGGAGGTCGAGTATTTACAGATCGCTCATCCCTTTCTGTCCCTGTGGATCTMGGTGCTAGCATTATCACTGGTGTTGAGGCTGATGTGGCCACTGAGAGAAGACCAGATCCTTCCTCACTGGTTTGCTCACAGTTGGGCCTTGAGTTGACYGTACTGAACAGTGACTGTCCTCTCTATGACATAATGACAGGACAAAAGGTCCCGGCAGATATGGATGAGGCACTGGAAGCTGAATACAATAGTCTTCTTGATGGTATGGAATTGCTTGTTGCTCAGAAAGGTGAACAAGCAATGAGAATGTCTCTTGAAGATGGTTTAGAGTATGCCCTTAAGATTCGCCGCTTGGCACATGCTGGAAGTGGTGAAGAYATTGAACAAGTCAATTCTGGAGATAGTCCGTTGGATTCCAAAAAGGTCAGTACAGTGGAAAAAAAATTCGAGCAGGACATTTTAAGTCCTCTGGAGAGAAGGGTCATGGATTGGCACTATGCTCATTTGGAGTATGGATGTGCAGCTTCACTTACAGAAGTTTCTCTTCCCAACTGGAATCAAGATGACGTGTATGGAGGATTTGGAGGAGCTCATTGTATGATTAAAGGCGGTTACAGTGCTGTTGTTGAGTCTCTTGCAGAAGGGCTTCCTATTCAATTGAACCATGTTGTAACAAATGTGTCWTACGATATCGAGGAACCTGGTRGCTGCAGTAAAGTCAAAGTTTCCACYTCAGATGGCAGTGAGTTCTTTGGGGATGCTGTTCTCYTCACCGTTCCACTAGGCTGTTTGAAGGCAGAAACCATACAATTTTCTCCCCCTTTGCCTGAGTGGAAATATTCTGCTGTTCAGCGTCTTGGTTATGGAGTTCTCAATAAAGTGGTTTTGGAATTTCCAAGTGTATTTTGGGATGATGCTGTGGATTACTTTGGAGCAACAGCTGAGGAGAGAGGTAAAAGAGGTCACTGCTTTATGTTCTGGAATGTCAGGAAGACAGTTGGCGCTCCTGTCCTTATAGCATTAGTTGTTGGTAAGGCAGCCATAGATGGTCAAAATTTGAYCTCTTCTGATCATGTTGAACATGCATTGAAGGTTCTTCGTAAACTTTTTGGGGAAACTTCAGTTCCAGATCCTGTTGCCCATGTTGTAACAGATTGGGGTAGAGATCCTTTTAGCTATGGTGCTTACTCTTATGTTGCCATTGGAGCATCAGGAGAAGACTATGATCTATTAGGGAGGCCAGTTGATAACTGTTTGTTTTTTTCTGGTGAAGCAACATGCAAAGAACACCCTGATACTGTTGGTGGTGCTATGATGAGTGGACTTCGGGAGGCAGTTCGCATAATTGACATATTGAGCTCTGGTAATGATTATACTGCAGAGGTGGAGGCAATGGAAGCTGCACAGAGGCAGCTAGATACTGAAAGGGATGAAGTTAGGGAGATAACAAAGAAACTTAATGCAGTTGAGCTTTCTAGTTTATTGTACAAGAACTCTTTAGATGGTGCTCAAGCTGTGACCCGGGAAGCTTTATTAAGAGAAATGTTTTTCACTGCAAAAACCAGTGCCGGGCGCCTGCATGTGGCAAAGCAATTGCTAAGTCTTCCTCTTGGAAAGTGGAAATCCTTTGCTGGMAGTAGAGCGGGGCTAACCGTTCTCAACTCATGGATACTGGACTCCATGGGGAAGGATGGAACCCAACTCTTGCGACATTGTGTGCGTCTTCTTGTACGTGTTTCCACTGATCTGCTTGCTGTACGCGTGTCAGGAATAGGAAAAACTGTGAAGGAAAAAGTTTGTGTACATACTAGCCGTGATATTCGTGCTATAGCAAGCCAGTTGGTCAATGTATGGCTTGAAGTTTTCCGCAAGGAAAAAGCTTCTAATGGGGGMTTGAAGTTGTCYAGACAAGCAGCTGCTGTAGATTTATCAAAGAGAAAACCTTTGAAAGACTCTGCCTCAGGAAAGCCACCTTTGAGTACACAGCATGGCATGCTTGAAAATAAAGGAGGTTTGCTGAATCCTGCATCTGCTGGAAGCAATTCACAAGTGAGGAAATRGCACAGCAAACAYGGAAAACAACAAGCAGCAAATGACTCAAGGCATGATGTCAGTTCTTCCAGGTCCCAAGGTTCAATAGACAAAGCTGCTGCAGAGGAGGATAACTATTATGCCTTGACTGAAGAAGAACGGGCTGCCATTGCTGCTGCGGAAGAGGCCCGTGCTAAAGCACATGCTGCTGCTCAGGCATATGCTTCTGCAGAAGCCAGATGCAGTACACTACTACAGCTTCCAAAGATACCTTCCTTCCACAAATTTGCTAYAAAGGAGCATTGTTCACAAAATGATGAATGTGATAGTAGAAGAAAGTGGTCTGGTGGAGTTTTGGGAAGGCAGGATTGTATTTCTGAAATTGATTCAAGGAATTGCAGAGTTAGGGAATGGTCAGTTGATTTCTCTGCTGCATGTGTTAACCTTGAGAATTCCAGAATGTCAGTTGACAACCTTTCACAGAGGAGRCATTCAAATGAGATTGCCAGCCATTTGAATTTCAGAGAGCACTCAGGAGAAAGTGTTGCTGCAGCAGACAGCAGTTTATATACAAAAGCTTGGATTGACACATCTGCTGGTGTGGGTATAAAAGACTCTTATGCCATAGAGAGATGGCAATCTCAAGCAGCTGCAGCTGATTCTTGTTTCTCTCATCCAACCATACATATGGGAGATGAGGAGGATTCAAATGCTCAGTCGATGTTATCCAGTCGYAAGCGTGATGGTTTGGCAAATGAGAGCTCTATTTCACAGGTTACTGTAAATAAGGAGGCCTTAAAAGGTCATCACCGGGGAGCTGATCATATTAAACAGGCTGTTGTGGATTATGTTGCCTCGCTACTTATGCCTCTTTATAAGGCAAGGAAACTAGACAAGGATGGGTACAAGGCTATCATGAAGAAAAGTGCAACAAAGGTCATGGAGGCAGCCACAGATGCTGAAAAAGCAATGATGGTTCATGAGTTTCTAGATTTTAAACGGAAGAACAAGGCTGTTGTTCGTCAAGAGTATGACAGGGCACCTCAATCTGCCATTTTAACGAACCTTGCCACTAAAGAAACAGATTGCGCAGGCAGGTTTGAAGATGACAACGAATCGCATTCATCCATATTAGTATTTTGTCTTCATCGAGAAAAGTCACTTACCTCTGAGAATGAGCCTCTGGATTGCAGCATGAGATGCCGATTTCTTTTGAATTGA 5646 0.426 MDGGDVRAGGKKKRPKPVEIGFDSDDDEPIGSMFKLRKSRGSKKKVGSAASEGSCGDGAKNVDAVTRKLVDAKDDLVGGMDDTLASFRKRLKGSGATRATSSVLNATVESSDRSLDLSVDGIEGHVASDDDVVARGSVRXSKDEKGVNLSVGDRLQXSSDEXMEDSLSAIFRKAQSSSVRKFRGSSGSRKKKESHNGDNKKHGDGCFLVEVTEGICHSNILDVCNEDRQQLSSIQSENFRCASDQERILNDALKQCSSMSHDVEMIDNGSLSKVVEGVSGTEGEVKNKLTDELAPVCNFGSEHGXTSMKKENFLPPCDTEPLVKSTGNISNENNYIVTGKVFSGCQVEVDEGVKSETDVVSDKDCCDYNGLNTKPDVKDLVLGISLEKNDVTASGSLSPNMSVEANESELDVLSNHSKKPLEVYSASILKCNSMLDPVQSDGSSLPSAPDENENNAEYNDSLSDFAYKDSKIRAVRKAKMHKHGDMTYEGDADWENLTNDQALNENHAAEDSESVAVVAVSAGLRAHAAGPMEKIKFKEMLKRKGGLKEYLACRNQILSLWSRDVTRVLPLAECGVSDAQSEXKSPRSSLTRDVYTFLEQCGYINIGIASXKDVGSSAMHSYKLVKEKGFEESSTASIADSEEGVSFIVGHTKMSDVSMENNHGLKXEDEDLPAEATEGRKAATINLLNXKQPKGENFDSQDNDEIQEGLXGTRHVNINNVVPSSKFPDCRLASAVATEQSNESICVKTVSADRIGDQMLSDSEARKRVIVIGAGPSGLTAARHLQRQGLTVTVLEARNRIGGRVFTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLVCSQLGLELTVLNSDCPLYDIMTGQKVPADMDEALEAEYNSLLDGMELLVAQKGEQAMRMSLEDGLEYALKIRRLAHAGSGEDIEQVNSGDSPLDSKKVSTVEKKFEQDILSPLERRVMDWHYAHLEYGCAASLTEVSLPNWNQDDVYGGFGGAHCMIKGGYSAVVESLAEGLPIQLNHVVTNVSYDIEEPGXCSKVKVSTSDGSEFFGDAVLXTVPLGCLKAETIQFSPPLPEWKYSAVQRLGYGVLNKVVLEFPSVFWDDAVDYFGATAEERGKRGHCFMFWNVRKTVGAPVLIALVVGKAAIDGQNLXSSDHVEHALKVLRKLFGETSVPDPVAHVVTDWGRDPFSYGAYSYVAIGASGEDYDLLGRPVDNCLFFSGEATCKEHPDTVGGAMMSGLREAVRIIDILSSGNDYTAEVEAMEAAQRQLDTERDEVREITKKLNAVELSSLLYKNSLDGAQAVTREALLREMFFTAKTSAGRLHVAKQLLSLPLGKWKSFAGSRAGLTVLNSWILDSMGKDGTQLLRHCVRLLVRVSTDLLAVRVSGIGKTVKEKVCVHTSRDIRAIASQLVNVWLEVFRKEKASNGGLKLSRQAAAVDLSKRKPLKDSASGKPPLSTQHGMLENKGGLLNPASAGSNSQVRKXHSKHGKQQAANDSRHDVSSSRSQGSIDKAAAEEDNYYALTEEERAAIAAAEEARAKAHAAAQAYASAEARCSTLLQLPKIPSFHKFAXKEHCSQNDECDSRRKWSGGVLGRQDCISEIDSRNCRVREWSVDFSAACVNLENSRMSVDNLSQRRHSNEIASHLNFREHSGESVAAADSSLYTKAWIDTSAGVGIKDSYAIERWQSQAAAADSCFSHPTIHMGDEEDSNAQSMLSSRKRDGLANESSISQVTVNKEALKGHHRGADHIKQAVVDYVASLLMPLYKARKLDKDGYKAIMKKSATKVMEAATDAEKAMMVHEFLDFKRKNKAVVRQEYDRAPQSAILTNLATKETDCAGRFEDDNESHSSILVFCLHREKSLTSENEPLDCSMRCRFLLN* 1882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0728 1881 ProSiteProfiles SWIRM domain profile. 515 615 IPR007526 GO:0005515
Amo06g0728 1881 MobiDBLite consensus disorder prediction 1700 1730 - -
Amo06g0728 1881 SUPERFAMILY FAD-linked reductases, C-terminal domain 1085 1196 - -
Amo06g0728 1881 MobiDBLite consensus disorder prediction 1441 1512 - -
Amo06g0728 1881 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 465 1812 - -
Amo06g0728 1881 SUPERFAMILY Homeodomain-like 513 610 IPR009057 -
Amo06g0728 1881 Pfam SWIRM domain 530 605 IPR007526 GO:0005515
Amo06g0728 1881 MobiDBLite consensus disorder prediction 439 460 - -
Amo06g0728 1881 MobiDBLite consensus disorder prediction 189 203 - -
Amo06g0728 1881 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1347 1429 IPR035441 -
Amo06g0728 1881 MobiDBLite consensus disorder prediction 1497 1511 - -
Amo06g0728 1881 Gene3D - 769 1245 IPR036188 -
Amo06g0728 1881 PANTHER FLAVIN MONOAMINE OXIDASE 465 1812 - -
Amo06g0728 1881 MobiDBLite consensus disorder prediction 1 60 - -
Amo06g0728 1881 MobiDBLite consensus disorder prediction 1708 1730 - -
Amo06g0728 1881 Coils Coil 1535 1555 - -
Amo06g0728 1881 Coils Coil 1256 1290 - -
Amo06g0728 1881 MobiDBLite consensus disorder prediction 181 203 - -
Amo06g0728 1881 Gene3D - 514 616 IPR036388 -
Amo06g0728 1881 PRINTS Adrenodoxin reductase family signature 791 804 - -
Amo06g0728 1881 PRINTS Adrenodoxin reductase family signature 768 790 - -
Amo06g0728 1881 Pfam Flavin containing amine oxidoreductase 777 1247 IPR002937 GO:0016491
Amo06g0728 1881 SUPERFAMILY FAD/NAD(P)-binding domain 766 1249 IPR036188 -
Amo06g0728 1881 MobiDBLite consensus disorder prediction 1 34 - -
Amo06g0728 1881 Gene3D - 875 1202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0728 Amo-Chr6 10320998 10330585 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-SWI3 Amo06g0728 Amino_oxidase 2.1e-106 CL0063