Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0719 ATGCTCAACGCCGAGCACCACTTCACAACCTTCAAGACTAAGTTCGGAAAGTCTTATGCCACTCAAGAAGAGCACGATTACCGCTTTGGCGTCTTCCRGGCGAACCTGAGGAGGGCGAAGCTGCACGCGAAGCTGGATCCGTCGGCGGAGCACGGTGTCACGAAATTCTCCGATCTGACGCCAGAGGAGTTCAAGAGGCAGTACCTTGGGTTGAAGCCGCTGCGGCTTCCGTCGACCGCTAACAAGGCTCCAATCCTGCCGACGAGCGATCTTCCAGAGAATTTCGATTGGCGTGACAAGGGTGCTGTTACTCCAGTCAAGAACCAGGGCTCTTGTGGTTCATGTTGGGCGTTTAGCACGACTGGGGCTTTGGAAGGCGCTCATTATCTGTCCACCGGAGAGCTTGTCAGCCTTAGTGAGCAACAGCTTGTAGACTGTGACCATGTGTGTGATCCAGAAGAATATGGAGCATGTGACGCAGGCTGCAATGGTGGGTTGATGAACAATGCTTTYGACTACATACTCCAGGCTGGAGGAGTACAGACAGAGAAGGACTATCCTTACASTGGAAGAGACGAGACCTGCAAATTCGACAAGAGCAAGGTCGCAGCTACRGTTGCRAATTTCAGTGTGGTTTCCCTTGATGAAGACCAAATTGCTGCAAATCTAGTGAAGCATGGCCCTCTTGCAGTTGGTATCAATGCAATATTCATGCAGACATACATAGGGGGAGTCTCATGCCCCTACATCTGCGGCAAGAATCTGGATCATGGCGTGCTCCTAGTGGGTTATGGCGCGGCCGGATATGCTCCCATTCGCTTCAAGGACAAGCCATTCTGGATCATCAAGAATTCATGGGGAGAGAGCTGGGGAGAGGATGGATACTACAAGATCTGCAGGGGTAAGAATGTGTGTGGAGTGGATTCCATGGTCTCAAGTGTAGTAGCTACTACATTTACATCTAGCAACAATTAA 975 0.5077 MLNAEHHFTTFKTKFGKSYATQEEHDYRFGVFXANLRRAKLHAKLDPSAEHGVTKFSDLTPEEFKRQYLGLKPLRLPSTANKAPILPTSDLPENFDWRDKGAVTPVKNQGSCGSCWAFSTTGALEGAHYLSTGELVSLSEQQLVDCDHVCDPEEYGACDAGCNGGLMNNAFDYILQAGGVQTEKDYPYXGRDETCKFDKSKVAATVANFSVVSLDEDQIAANLVKHGPLAVGINAIFMQTYIGGVSCPYICGKNLDHGVLLVGYGAAGYAPIRFKDKPFWIIKNSWGESWGEDGYYKICRGKNVCGVDSMVSSVVATTFTSSNN* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0719 324 SUPERFAMILY Cysteine proteinases 5 314 IPR038765 -
Amo06g0719 324 Pfam Cathepsin propeptide inhibitor domain (I29) 8 64 IPR013201 -
Amo06g0719 324 PRINTS Papain cysteine protease (C1) family signature 257 267 IPR000668 GO:0006508|GO:0008234
Amo06g0719 324 PRINTS Papain cysteine protease (C1) family signature 279 285 IPR000668 GO:0006508|GO:0008234
Amo06g0719 324 PRINTS Papain cysteine protease (C1) family signature 109 124 IPR000668 GO:0006508|GO:0008234
Amo06g0719 324 SMART pept_c1 91 315 IPR000668 GO:0006508|GO:0008234
Amo06g0719 324 Pfam Papain family cysteine protease 91 313 IPR000668 GO:0006508|GO:0008234
Amo06g0719 324 CDD Peptidase_C1A 92 314 IPR039417 -
Amo06g0719 324 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 279 298 IPR025661 -
Amo06g0719 324 PANTHER CYSTEINE PROTEASE RD19C-RELATED 2 316 - -
Amo06g0719 324 Gene3D Cysteine proteinases 1 315 - -
Amo06g0719 324 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 2 316 - -
Amo06g0719 324 SMART Inhibitor_I29_2 8 64 IPR013201 -
Amo06g0719 324 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 109 120 IPR000169 -
Amo06g0719 324 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 255 265 IPR025660 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0719 Amo-Chr6 10240071 10242339 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g0719 06 10240071 10242339 Amo17g2196 17 112791075 112793375 PCT
Amo17g2196 17 112791075 112793375 Amo06g0719 06 10240071 10242339 PCT