Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0716 ATGATCAAAGCAAGGATGATGGGAACTGATCAGGAGAGAAAGCAATTGATGAGGAAGCAAGCACAAGCCAATTCAAGAAAGGGTTGTATGAGGGGAAAAGGAGGCCCTCAGAATGCAACATGCACCTACAAAGGTGTAAGGCAAAGGATTTGGGGCAAATGGGTTGCCGAGATTCGCGAACCACGACGTGGTTCGCGTATCTGGCTTGGGACGTTCAATACGTCCCATGAAGCCGCCTTGGCTTACGATGCTGCGGCGCGTAAGCTTTACGGCCATGATGCTAAGCTCAATCTCCCAGACCTTCAACCCTCTATCTCCACAACTCAGGATATTCAAAGAGACAACCTTCTTCAACAACAATCTCACATGATGATTAATCAGCACAACATTGGCACCTCTTTCAACAACAACAACAATAACCTCAAACCTTTGGTGCCCATGGCTGAGGTTGGTGTTACACCAATTTACACCAATGAAGGCATTATGTCTCTTCCCTTAAGAGATGATATCAACACCTACACCACCATCAACAACATCAATAACTTCAACACCAAACCTATAATTTTGGAAAGCTTCCGAAACCCAACAAAGCCTATGGACAATAATATTATCAATAATAATAATGTAGAGAAGCCAAGTTCCTCATTTTCTGAGCCAGATTTTTATGATGATTCCATTTGGACAGAAGCTGCTGCATCTTTGAACTTTCCTATGCTTTCAGATGCTAATAATGGTTTTTATGAAGCTGGGGATATGGCTTGGATATGCAAGTTTAAATTTTTTGGATTTTATTATATAGTATTATTAAAATTTCTATGA 819 0.4115 MIKARMMGTDQERKQLMRKQAQANSRKGCMRGKGGPQNATCTYKGVRQRIWGKWVAEIREPRRGSRIWLGTFNTSHEAALAYDAAARKLYGHDAKLNLPDLQPSISTTQDIQRDNLLQQQSHMMINQHNIGTSFNNNNNNLKPLVPMAEVGVTPIYTNEGIMSLPLRDDINTYTTINNINNFNTKPIILESFRNPTKPMDNNIINNNNVEKPSSSFSEPDFYDDSIWTEAAASLNFPMLSDANNGFYEAGDMAWICKFKFFGFYYIVLLKFL* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0716 272 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Amo06g0716 272 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 18 243 - -
Amo06g0716 272 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
Amo06g0716 272 CDD AP2 41 101 IPR001471 GO:0003700|GO:0006355
Amo06g0716 272 Pfam AP2 domain 42 92 IPR001471 GO:0003700|GO:0006355
Amo06g0716 272 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Amo06g0716 272 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Amo06g0716 272 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 18 243 - -
Amo06g0716 272 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Amo06g0716 272 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0716 Amo-Chr6 10133552 10135853 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo06g0716 AP2 4.3e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g0716 06 10133552 10135853 Amo08g0145 08 2585214 2585945 PCT
Amo08g0145 08 2585214 2585945 Amo06g0716 06 10133552 10135853 PCT