Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0715 ATGATAATGGTGTCTCCGATAATTTCCCCTCCTTCATCTTCATCTTCCACACTTCATCTTCATTCCTTCGAATCTACCTTCTTCTTCTCCACTCCCTTACTTCCACAAAGGAACATACGATTTCAAAGTAGATGCAATAAGTTTGAGAAGCATAGATGGAAAGATGCTGTACGGTGCAGATTTATCAGCTCCAATGCACCTTCAACTTCAACATCAAATTCAAATTCAATGACGTTGATGAAGGAACCTCACAAGTACTTTGACCAAGTTTTCATTACCGTTCGTGCTGGTGATGGTGGGCATGGAGCTATACTCAATGCCCCCAATACTCAAAGATCACCAACAAAACAAGACCAGAAGAAGGATAAGGACAAGATTAAGAAGAAAAGCTCCTTGAAGAGGGACTTTGATGGTTCACTCATACTCCCAATGGGTGGACATGGTGGTGATGTGGTTATCTACGCAGATGAGGGAAAGGACACATTGTTGGAATTTCACAACAAGGGAAGGTACAATGCTAAGCGTGGTGGAAATGTTGATGCAATGGGTGTGTTAAGTTCACTGTTGCGTAATGGAATCACGGCCCCAACTTTGCGCATTCCTGTGCCTGTAGGTACAGTTGTGAAAAACAAACGAGGGAAGACGTTGGCTGATCTAGCACAACCTGGCGATGAAGTTCTTGTAGCTAGGGGTGGACAAGGAGGGATTAGTTTGTTAGAAGTTCCACAGCATCAAAAGAAAAGGATGATGACTTTGACAACTAACGTGATGAGAGATGAATCTGATAAGGTATTAGTTCACGGTCAGCCTGGGGAAGAAATTAAATTGGAGTTGATCCTGCGAGTAGTTGCCGATGTTGGTCTAGTTGGACTTCCAAATGCTGGAAAATCGACACTTCTGGCAGCGATTACACTCGCAAAACCTGACATTGCTGACTATCCATTTACAACATTAATGCCAAACCTCGGCCGCCTTGGCGGTGATCCTACCTTAGGGGCAGGGATGTATTCATCTGAAGCTACGTTGGCAGATTTGCCTGGCCTTATAGAAGGAGCTCACTTAGGAAAGGGTCTTGGCCGCAATTTTTTGAGGCACCTGAGGCGGACTCGAGTGTTGGTTCATGTTGTTGATGCGGCCGCTGAGAACCCTATAAATGACTACAGAACTGTTAGAGAAGAGTTGCGCATGTATAATCCCGAGTACCTTGAAAGACCATACATTGTTGTTTTGAATAAGATTGACCTATCCGAGGCAAAGAACAGGCTTTCATCACTTTCTGAAGAAATTATGAAAATAGGCAACAATAGCACAGCTTCTGAACCGAAACCAAGTCCGGAAGTTCCGGATGAATCATCATCTGATGAAGGTGACCTGCCGGAGAAAGCGCTCGAGGACTATCCACCACCTCTCTCGGTTGTTGGAGTTAGTGTTCTAAAGGGTATCAAGATAAAGGAGATGTTGAAGGAAATAAGGGCTGCTTTAAGGAAGTGCACTGGTTCCAATGAGCCTTCGAGTGTGCCACCGCCGCCTTGA 1533 0.4468 MIMVSPIISPPSSSSSTLHLHSFESTFFFSTPLLPQRNIRFQSRCNKFEKHRWKDAVRCRFISSNAPSTSTSNSNSMTLMKEPHKYFDQVFITVRAGDGGHGAILNAPNTQRSPTKQDQKKDKDKIKKKSSLKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKGRYNAKRGGNVDAMGVLSSLLRNGITAPTLRIPVPVGTVVKNKRGKTLADLAQPGDEVLVARGGQGGISLLEVPQHQKKRMMTLTTNVMRDESDKVLVHGQPGEEIKLELILRVVADVGLVGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGRLGGDPTLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRVLVHVVDAAAENPINDYRTVREELRMYNPEYLERPYIVVLNKIDLSEAKNRLSSLSEEIMKIGNNSTASEPKPSPEVPDESSSDEGDLPEKALEDYPPPLSVVGVSVLKGIKIKEMLKEIRAALRKCTGSNEPSSVPPPP* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0715 510 Pfam 50S ribosome-binding GTPase 285 412 IPR006073 GO:0005525
Amo06g0715 510 Coils Coil 415 435 - -
Amo06g0715 510 PANTHER GTP-BINDING PROTEIN OBGC2-RELATED 58 503 - -
Amo06g0715 510 Pfam GTP1/OBG 145 281 IPR006169 -
Amo06g0715 510 SUPERFAMILY Obg GTP-binding protein N-terminal domain 145 248 IPR036726 -
Amo06g0715 510 TIGRFAM small_GTP: small GTP-binding protein domain 285 433 IPR005225 GO:0005525
Amo06g0715 510 MobiDBLite consensus disorder prediction 115 131 - -
Amo06g0715 510 PRINTS GTP1/OBG GTP-binding protein family signature 286 306 IPR006073 GO:0005525
Amo06g0715 510 PRINTS GTP1/OBG GTP-binding protein family signature 307 325 IPR006073 GO:0005525
Amo06g0715 510 PRINTS GTP1/OBG GTP-binding protein family signature 342 357 IPR006073 GO:0005525
Amo06g0715 510 PRINTS GTP1/OBG GTP-binding protein family signature 359 377 IPR006073 GO:0005525
Amo06g0715 510 ProSitePatterns GTP1/OBG family signature. 344 357 IPR006074 GO:0005525
Amo06g0715 510 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 284 495 IPR031167 GO:0005525
Amo06g0715 510 CDD Obg 284 422 IPR031167 GO:0005525
Amo06g0715 510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 285 496 IPR027417 -
Amo06g0715 510 Gene3D - 283 502 IPR027417 -
Amo06g0715 510 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 58 503 IPR045086 GO:0003924|GO:0005525
Amo06g0715 510 ProSiteProfiles Obg domain profile. 84 283 IPR006169 -
Amo06g0715 510 MobiDBLite consensus disorder prediction 433 470 - -
Amo06g0715 510 Gene3D GTP1/OBG domain 85 282 IPR036726 -
Amo06g0715 510 MobiDBLite consensus disorder prediction 102 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0715 Amo-Chr6 10126149 10131305 Dispersed/Transposed