Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1161 ATGAATCAAAGATCTATGGATGAACAAATGATGCTTATATCTCAGCTATATCCTGCTGGTGGTGGTGCCTACACTCAGATAATTGCTCAACAAGGGGAGAATAAGAAAGCAAGAAGGAGGCGTAATAAGAAGAAGAAGGGAGGAGAAAACGGAGGTGGAGAAGGGAACAAAAAGAGAAAGTTGAGTGAAGAGCAAGTGAATCTTCTTGAGATGAATTTTGGGAATGAACACAAACTGGAGTCGGAACGGAAGGACAAGCTAGCTTTGGAGCTTGGTTTGGATCCGAGGCAAGTTGCCGTTTGGTTTCAGAATAGAAGAGCTCGTTGGAAGAACAAGAAACTGGAGGAAGAATACTCCAATCTCAAGAGAGCACATGAAACCACTTTACTCGACAAATGTCGCCTTGAAACTGAGGTGCTGAAACTTAACGAGCAACTTTCTAATGCAAAAGAGGAGATTCAACGATTGCAAGACATGGTCCCAAGCAACAGTTCTAGTTCGCAATCGCAATCACAATCACAGTCAATGGAAATTATGGACCCGCCATTTCTTGGAGACTATGTCTTTTGTGTACCTGAAGCTCATTACATTAATGGCATGGAATGGGTTGATCCGTACGAAAATATTTGGTAA 633 0.4218 MNQRSMDEQMMLISQLYPAGGGAYTQIIAQQGENKKARRRRNKKKKGGENGGGEGNKKRKLSEEQVNLLEMNFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKRAHETTLLDKCRLETEVLKLNEQLSNAKEEIQRLQDMVPSNSSSSQSQSQSQSMEIMDPPFLGDYVFCVPEAHYINGMEWVDPYENIW* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1161 210 Pfam Homeodomain 57 111 IPR001356 GO:0003677
Amo05g1161 210 MobiDBLite consensus disorder prediction 157 176 - -
Amo05g1161 210 MobiDBLite consensus disorder prediction 30 62 - -
Amo05g1161 210 Gene3D - 48 120 - -
Amo05g1161 210 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Amo05g1161 210 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 7 207 - -
Amo05g1161 210 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 7 207 IPR045224 GO:0003700
Amo05g1161 210 SMART HOX_1 55 116 IPR001356 GO:0003677
Amo05g1161 210 Coils Coil 139 159 - -
Amo05g1161 210 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Amo05g1161 210 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Amo05g1161 210 SUPERFAMILY Homeodomain-like 56 120 IPR009057 -
Amo05g1161 210 MobiDBLite consensus disorder prediction 47 62 - -
Amo05g1161 210 Coils Coil 104 131 - -
Amo05g1161 210 CDD homeodomain 59 113 IPR001356 GO:0003677
Amo05g1161 210 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1161 Amo-Chr5 15936245 15938235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1161 1 206 Homeobox Transcription Factor Family AT4G36740 54.299 1.75e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Amo05g1161 Homeodomain 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1161 K09338 - gmx:100809616 257.684