Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1000 ATGATTCAAGAACTCTTCGCTGGTGCTGGCTTTGTAGCACCTCCTGACAAGAAATACTCCATTAACAACAACAATCTTATTAGTAATAATGGAGGTGGAGGAGGAGGAGGAGGACTTCTCTTACCACCAGCACCACCTTCTTCTTCTTCTTCTTCTACACCTACTTCTACGGTTGTGGCCGCCACCTCATCAAATAGTTCGGAGAATCTGAGGTGTCCGCGATGCGATTCATCCAACACAAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCATTTCTGCAAGACATGCCGAAGGTACTGGACCAAAGGTGGTGCTCTCAGGAACGTCCCCATCGGCGGTGGCTGCCGGAAAAACAAGAACATCGGTGTCTCGAACTCCTCAGCGGCAAAGGCTGCAAGCGCCACCCCGAAGATGAAAGCTATGGTGGCATCAGAGCTCAGAAGATCATCATCATCGCCGCTTGGAATCGACCACCACGATCTTCCAGCAGGACCAATCCTATGGGGATCTCCACAGAATAGTCATCTATTGGCGTTACTCCGAGCTGGCCAGAGCCAAAACCCTAACCCTAACCCTAACTCCATGCTCATGAACGGTGTTTCAGTGAAGGAAGAACGGAACTACAACATGGTGAGTAGTACTGCAGTAGAGCCATTGATGATGAATAATAATATTCCAAGAACAACCCTAGGCTATGATGGAGTTGGAGTTGGACACATTCCTCAATTGGATCTGTGCAGCTCTTTGTGGAGAAGCAATAATAATAACAATCAAGAGCATCAACCTGCAGCAGCTGCTACTTCCTTTCTACTTTCTGAACAACACCAAACCAGTAGCAATGGAATTCAACAACTTTATCACAAACTCAGGTCAACACCTAATAACTATGCCACTCACAATAATTCATCGCCAATCTTCATGCCAAACATGGCTGCTTCTTCTTCTTCTTCTTCTTTATCCACCATTTTGGAATCATCTTCGGTTTCCACCGCTGAATTGGGCTGCTGGAATAATCCAACCCTTCCCTGGCTTTCTGATCTTCCTGCTGCAACCAATGGTGCATACCCTAATTAA 1086 0.465 MIQELFAGAGFVAPPDKKYSINNNNLISNNGGGGGGGGLLLPPAPPSSSSSSTPTSTVVAATSSNSSENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNIGVSNSSAAKAASATPKMKAMVASELRRSSSSPLGIDHHDLPAGPILWGSPQNSHLLALLRAGQSQNPNPNPNSMLMNGVSVKEERNYNMVSSTAVEPLMMNNNIPRTTLGYDGVGVGHIPQLDLCSSLWRSNNNNNQEHQPAAAATSFLLSEQHQTSSNGIQQLYHKLRSTPNNYATHNNSSPIFMPNMAASSSSSSLSTILESSSVSTAELGCWNNPTLPWLSDLPAATNGAYPN* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1000 361 Pfam Dof domain, zinc finger 69 124 IPR003851 GO:0003677|GO:0006355
Amo05g1000 361 ProSitePatterns Zinc finger Dof-type signature. 72 108 IPR003851 GO:0003677|GO:0006355
Amo05g1000 361 MobiDBLite consensus disorder prediction 34 62 - -
Amo05g1000 361 ProSiteProfiles Zinc finger Dof-type profile. 70 124 IPR003851 GO:0003677|GO:0006355
Amo05g1000 361 PANTHER F-BOX FAMILY PROTEIN 43 358 - -
Amo05g1000 361 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 43 358 IPR045174 GO:0003700|GO:0006355
Amo05g1000 361 MobiDBLite consensus disorder prediction 44 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1000 Amo-Chr5 13105999 13107510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g1000 70 141 C2C2-Dof Transcription Factor Family AT5G60200 75.000 4.89e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo05g1000 zf-Dof 1.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1000 - - adu:107487764 609.757