Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo05g0989 | ATGCCCTCCTCCGACTCCGGCGAAAGCCGTCGATCAGCCAAGCCTCACAACACTTCCCTAGCCCCACCGCCGGCCGAGCAAGAGCACCTGCCGTGCCCTCGCTGCGACTCTACTAATACCAAGTTCTGCTACTACAACAACTACAACTTCTCCCAGCCTCGCCACTTCTGCAAGTCCTGCCGCCGCTACTGGACCCACGGCGGCACTCTCCGTGACATCCCCGTCGGCGGTGGAAGCCCACCCGTGCAGTTCGGTGGAGTAGTTGTGGATGGTGAAGCAAAGGGTAATAACGTGAGCTTGTGCGGTGGGAGCTTCACTTCGTTGCTGAGCAACACACAGCAGGGTCCTGGTGGGTTTCTGGCTCTGGGTGGGTTTGGGCTTGGTCTTGGGCCTGGCCTCGAAGATGTTGGATTTGGGATGGGGATGGGGAGAGGCGGTTGGGCTTTCCCGGGCGTGGTGGCGGACGGAGGCAGCATTGGCGGCGGTGTTGCGGGKTCCGGTGTTGGGCACACGTGGCAGTTTGAAGGCGGCGATCAAGGTGGCTTTGTTTCTGGAGACTGCTTCCCTTGGCCGGGACTAGCCATTTCCACACCCGGAAATGGTCTCAAATAA | 612 | 0.6029 | MPSSDSGESRRSAKPHNTSLAPPPAEQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSPPVQFGGVVVDGEAKGNNVSLCGGSFTSLLSNTQQGPGGFLALGGFGLGLGPGLEDVGFGMGMGRGGWAFPGVVADGGSIGGGVAGSGVGHTWQFEGGDQGGFVSGDCFPWPGLAISTPGNGLK* | 204 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo05g0989 | 203 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Amo05g0989 | 203 | ProSitePatterns | Zinc finger Dof-type signature. | 32 | 68 | IPR003851 | GO:0003677|GO:0006355 | |
Amo05g0989 | 203 | Pfam | Dof domain, zinc finger | 28 | 79 | IPR003851 | GO:0003677|GO:0006355 | |
Amo05g0989 | 203 | PANTHER | DOF ZINC FINGER PROTEIN DOF3.4 | 91 | 200 | - | - | |
Amo05g0989 | 203 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Amo05g0989 | 203 | PANTHER | DOF ZINC FINGER PROTEIN DOF3.4 | 1 | 80 | - | - | |
Amo05g0989 | 203 | ProSiteProfiles | Zinc finger Dof-type profile. | 30 | 84 | IPR003851 | GO:0003677|GO:0006355 | |
Amo05g0989 | 203 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 1 | 80 | IPR045174 | GO:0003700|GO:0006355 | |
Amo05g0989 | 203 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 91 | 200 | IPR045174 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo05g0989 | Amo-Chr5 | 13029891 | 13030643 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo05g0989 | 1 | 203 | C2C2-Dof Transcription Factor Family | AT3G50410 | 46.875 | 2.27e-55 | 174 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-Dof | Amo05g0989 | zf-Dof | 1.1e-31 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo05g0989 | - | - | ahf:112786370 | 246.899 |