Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0975 ATGCCCTCCTCCGACTCCGGCGAAAGCCGTCGATCAGCCAAGCCTCACAACACTTCCCTAGCCCCACCGCCGGCCGAGCAAGAGCACCTGCCGTGCCCTCGCTGCGACTCTACTAATACCAAGTTCTGCTACTACAACAACTACAACTTCTCCCAGCCTCGCCACTTCTGCAAGTCCTGCCGCCGCTACTGGACCCACGGCGGCACTCTCCGTGACATCCCCGTCGGCGGTGGAAGCCCACCCGTGCAGTTCGGTGGAGTAGTTGTGGATGGTGAAGCAAAGGGTAATAACGTGAGCTTGTGCGGTGGGAGCTTCACTTCGTTGCTGAGCAACACACAGCAGGGTCCTGGTGGGTTTCTGGCTCTGGGTGGGTTTGGGCTTGGTCTTGGGCCTGGCCTCGAAGATGTTGGATTTGGGATGGGGATGGGGAGAGGCGGTTGGGCTTTCCCGGGCGTGGTGGCGGACGGAGGCAGCATTGGCGGCGGTGTTGCGGGCTCCGGTGTTGGGCACACGTGGCAGTTTGAAGGCGGCGATCAAGGTGGCTTTGTTTCTGGAGACTGCTTCCCTTGGCCGGGACTAGCCATTTCCACACCCGGAAATGGTCTCAAATAA 612 0.6046 MPSSDSGESRRSAKPHNTSLAPPPAEQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSPPVQFGGVVVDGEAKGNNVSLCGGSFTSLLSNTQQGPGGFLALGGFGLGLGPGLEDVGFGMGMGRGGWAFPGVVADGGSIGGGVAGSGVGHTWQFEGGDQGGFVSGDCFPWPGLAISTPGNGLK* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0975 203 MobiDBLite consensus disorder prediction 1 30 - -
Amo05g0975 203 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Amo05g0975 203 Pfam Dof domain, zinc finger 28 79 IPR003851 GO:0003677|GO:0006355
Amo05g0975 203 PANTHER DOF ZINC FINGER PROTEIN DOF3.4 91 200 - -
Amo05g0975 203 MobiDBLite consensus disorder prediction 1 16 - -
Amo05g0975 203 PANTHER DOF ZINC FINGER PROTEIN DOF3.4 1 80 - -
Amo05g0975 203 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Amo05g0975 203 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 80 IPR045174 GO:0003700|GO:0006355
Amo05g0975 203 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 91 200 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0975 Amo-Chr5 12842654 12843406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0975 1 203 C2C2-Dof Transcription Factor Family AT3G50410 46.875 2.27e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo05g0975 zf-Dof 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0975 - - ahf:112786370 246.899