Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0038 ATGATAAAAGAACAAGGTGGTGGTGGTGGTGGCGGTGGGAGCAAGAAAAGCACTACATCGGGTTCCAGCGCAACCACGTCATCACAGCAACAAGAACAACAAGCATCAGTGGCTGCTCTAAAGTGTCCAAGATGCGATTCACCAAACACAAAATTCTGTTACTACAACAACTACAGCCTCACGCAGCCACGTCACTTCTGCAAGACTTGCCGAAGGTACTGGACCAAAGGCGGTGCCTTGAGGAACGTTCCCATTGGCGGAGGCTGCCGTAAGAACAAGAAGCTCAATAAGTCTTCAAGATTACTCTCTTCTCCCTCATCTGACTCCCCTGGAGTAGGATCTTCTTCAGACCTTGCTGTTCTTGGTGGTGGTCTTAAGTTCCTCCATGGTCTCGCTTCTTCAGTTCCCGTACCTCCTTCTCTTGATTTTCACCTTGGTGCTGCTGCAGCTGCCTTACCTTTCCCTACAAGACTCCACCACCCTTCTTCTACCATCTTCAACAACAACCACTTCGCTTCGTTGCTATCAACAACTTCTTCTAACGCCTTCAACATTGATCCTAATCATTCTTCTGTTATCGGTTTGAATAATTACGCGTTTTCCACGGGGTTAGGCGGTGGTGCTGGTGGTGCAATCGAGGGGATAAGCTCCGCCATGAACGCTCATCATCATGGGAATAGTAATAACATTGCTTCTTCTATTGAGTCGTTGAGTTCTATGAACCAGGACTTGCACTGGAAGCTACAACAGCAAAGGTTGGCCATGCTTTTTGGCGGTGGTGGCAGCGGAGATGATGCCAACAATAATCAACAAAAAGACGTTGCCGGTGGCGGCGGCGGCGGCGGTGGACTTGAGAAGCCGCAACCGATTTTGTTTCAGAATCTTGACGGTTCTTCAATCAACAGAAAAGAAGAAAATACCGTAATTGCCCCAACTGAGTGGTTCTTTGGAAACTCTTATCCCTCGGTGAATCCTACACCAACCACAAGTACCGGCGGTGGCAGCGGCGGCGGCGGTGGTGCTGCCGGCAATGATAACGGAATGAATTGGGTTGGTGTTGGTTGGGGTGACGTGCAGCATCAATACAGTGCTTTGCCCTAG 1101 0.495 MIKEQGGGGGGGGSKKSTTSGSSATTSSQQQEQQASVAALKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKLNKSSRLLSSPSSDSPGVGSSSDLAVLGGGLKFLHGLASSVPVPPSLDFHLGAAAAALPFPTRLHHPSSTIFNNNHFASLLSTTSSNAFNIDPNHSSVIGLNNYAFSTGLGGGAGGAIEGISSAMNAHHHGNSNNIASSIESLSSMNQDLHWKLQQQRLAMLFGGGGSGDDANNNQQKDVAGGGGGGGGLEKPQPILFQNLDGSSINRKEENTVIAPTEWFFGNSYPSVNPTPTTSTGGGSGGGGGAAGNDNGMNWVGVGWGDVQHQYSALP* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0038 366 MobiDBLite consensus disorder prediction 320 345 - -
Amo05g0038 366 Pfam Dof domain, zinc finger 39 94 IPR003851 GO:0003677|GO:0006355
Amo05g0038 366 MobiDBLite consensus disorder prediction 257 290 - -
Amo05g0038 366 MobiDBLite consensus disorder prediction 98 114 - -
Amo05g0038 366 MobiDBLite consensus disorder prediction 96 115 - -
Amo05g0038 366 MobiDBLite consensus disorder prediction 1 32 - -
Amo05g0038 366 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Amo05g0038 366 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Amo05g0038 366 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 366 IPR045174 GO:0003700|GO:0006355
Amo05g0038 366 MobiDBLite consensus disorder prediction 320 335 - -
Amo05g0038 366 MobiDBLite consensus disorder prediction 12 32 - -
Amo05g0038 366 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 16 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0038 Amo-Chr5 404576 405806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g0038 20 366 C2C2-Dof Transcription Factor Family AT5G65590 38.904 4.79e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo05g0038 zf-Dof 6.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0038 - - ahf:112747350 604.364