Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0175 ATGGGAGAAACACAGCATCACCGTCCAACATCGTCAAGACTTGGGATGAGGGCCGTGGCCGGAGGAGGAGGAGGGGGAGAAATTGTGGAGGTCCAAGGAGGCCACATTGTGCGGTCCACCGGCCGGAAGGACCGACACAGCAAGGTCTGCACAGCCAAGGGCCCGAGGGACCGCCGTGTGCGACTCTCCGCACACACCGCCATCCAGTTCTACGACGTTCAGGACCGACTCGGCTACGACCGCCCAAGCAAGGCCGTCGACTGGCTCATCAAGAAAGCAAAGGCCGCCATCGACGAGCTCGCCGAGCTCCCCGCATGGAAACCAACTGCCACTACCACGACCGTCGCCGCCGCCGCCGCGGCCTCGAACTCAAATGTTGCTGTTCAGCAGCAGAAGCTCCGGGAGGAGGAGGAAAACCAACAGCTGAATCAAATCGTCCACCGCCAATCGACCACGGTGGACGACGCTATGGAAGCTTCTGGTAGCCGAAAGGCTACCGCACTGGTTGGTGGCAGTGGAAGAATCTCGGAATTTCAACCGCAACATTTGAACGACGATAACGGTAGTAGTGGCAAATACAACAGTGGCGGTTCTGGTTTCTTTCCGCCGACTTTGGACACTGATATAGCTGATACCATTAAGTCTTTCTTTCCGATGGTGGGGCCGGGGGAGGTTGCAACAACGACGTCGTCCTTTCATAACTATCCTCCACCGCCTGATTTGCTTTCGCGTACAACTAGCGGCGGAAGCAACCACAACCACCACCACCACCACCACCATCACCATCACCAACAGCAAGATCTGCGGCTCTCGCTGCAGTCTTTCCAGGACCCATCGATTCTTCTTCAGCACCACCAACAACAGCAGCAGCAGCCGCCACACCAACAGCATGTTCACGAGCAAGTGCTCTTCGCCGGAACCACCGCACTAGCGTTCGACGGCGGTTCTTCCGGATGGTCTGAACAGCAGCACCACCAAGAGGAACAGGAGCATGGACGATTGCAGAGAATGGTGGCTTGGAATAATGCCGCTGCAGATGCTAGTAGCAGTGGCCATGCCAGTGGATTCATCTTCAACTCGTCGGCGACGGCGGCTGTGCCGTCTCCTGCGATGTTTGGCCATGGCCAGTTTTTTCCTCAGAGGGGACCCCTTCAGTCCAGTAACACCCCTTCGTTTCGTGCTTGGATAGATCCTTCTTCGATCGCCACGGCTGCCATGACTGTGGATCACCACCACTATCTTTCACCGGCCGCGATCCATCAAGCTTCTATTGGGTTTGCCGGCTCTTCATCCGGTAGCTTCTCTGGCTTCCGCATACCAGCACGAATTCAGGGTGCGGAGGAGCACGACGGCGTATCTGACAAGCCGTCCTCTGCTTCCTCCGATTCTCGCCATTGA 1398 0.5722 MGETQHHRPTSSRLGMRAVAGGGGGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPAWKPTATTTTVAAAAAASNSNVAVQQQKLREEEENQQLNQIVHRQSTTVDDAMEASGSRKATALVGGSGRISEFQPQHLNDDNGSSGKYNSGGSGFFPPTLDTDIADTIKSFFPMVGPGEVATTTSSFHNYPPPPDLLSRTTSGGSNHNHHHHHHHHHHQQQDLRLSLQSFQDPSILLQHHQQQQQQPPHQQHVHEQVLFAGTTALAFDGGSSGWSEQQHHQEEQEHGRLQRMVAWNNAAADASSSGHASGFIFNSSATAAVPSPAMFGHGQFFPQRGPLQSSNTPSFRAWIDPSSIATAAMTVDHHHYLSPAAIHQASIGFAGSSSGSFSGFRIPARIQGAEEHDGVSDKPSSASSDSRH* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0175 465 Coils Coil 119 145 - -
Amo03g0175 465 MobiDBLite consensus disorder prediction 1 25 - -
Amo03g0175 465 MobiDBLite consensus disorder prediction 177 199 - -
Amo03g0175 465 MobiDBLite consensus disorder prediction 443 465 - -
Amo03g0175 465 MobiDBLite consensus disorder prediction 228 269 - -
Amo03g0175 465 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 465 IPR005333 GO:0003700
Amo03g0175 465 MobiDBLite consensus disorder prediction 228 249 - -
Amo03g0175 465 MobiDBLite consensus disorder prediction 250 265 - -
Amo03g0175 465 MobiDBLite consensus disorder prediction 442 465 - -
Amo03g0175 465 Pfam TCP family transcription factor 41 149 IPR017887 -
Amo03g0175 465 PANTHER TRANSCRIPTION FACTOR TCP4 1 465 - -
Amo03g0175 465 MobiDBLite consensus disorder prediction 170 199 - -
Amo03g0175 465 ProSiteProfiles TCP domain profile. 42 100 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0175 Amo-Chr3 3356303 3359726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0175 9 465 TCP Transcription Factor Family AT1G53230 45.127 3.48e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Amo03g0175 TCP 7.4e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2302 13 39589163 39591215 Amo03g0175 03 3356303 3359726 hybridization
Amo03g0175 03 3356303 3359726 Amo18g1034 18 16900277 16903150 PCT
Amo03g0175 03 3356303 3359726 Amo08g1311 08 21318711 21321629 PCT