Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1242 ATGGCTCCACTAGAAAAAACTGGAGAAGAAAGAGAAGGGATTAAACTGTTTGGCATAACGATCACGTTGCATGCAGCAGAAAGAAAAGAAGATGAGAAAAGCAGCAATGGTAGCGAAGAAGATGATGATCATGATCATGGAGAAGATCAAGAAGAGATGATGAAGAAACCAAACAAGATCATAGCATGTCCAAGATGCAAGAGCATGGAAACCAAGTTTTGTTACTTCAATAACTACAACGTTAATCAGCCTAGGCATTTCTGCAAGGCCTGCCACAGGTATTGGACTGCCGGAGGGGCCCTTCGCAACGTCCCGGTCGGTGCAGGCCGCCGAAAGGGTAAGCTGCCGTCCCCTGCCGCCGCCCGTCACGGTGGCGCCATCTGTGATTCATCATCCACTGTTCAGAAATTTGGATTAGATGATGAAGAGGGGTTGGTTTTGGACGAGTGGGATGTTGCCACCGTCATTCACGGTGGTTTCCGGCAGCTTTTTCATCAGTCGTCTAAACGGCGGAGGACGAGCTCTGAGGATGCTCAACCTTGTTAA 546 0.4872 MAPLEKTGEEREGIKLFGITITLHAAERKEDEKSSNGSEEDDDHDHGEDQEEMMKKPNKIIACPRCKSMETKFCYFNNYNVNQPRHFCKACHRYWTAGGALRNVPVGAGRRKGKLPSPAAARHGGAICDSSSTVQKFGLDDEEGLVLDEWDVATVIHGGFRQLFHQSSKRRRTSSEDAQPC* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1242 181 Pfam Dof domain, zinc finger 59 114 IPR003851 GO:0003677|GO:0006355
Amo02g1242 181 MobiDBLite consensus disorder prediction 25 55 - -
Amo02g1242 181 ProSiteProfiles Zinc finger Dof-type profile. 61 115 IPR003851 GO:0003677|GO:0006355
Amo02g1242 181 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 9 176 - -
Amo02g1242 181 PANTHER CYCLIC DOF FACTOR 2 9 176 IPR045174 GO:0003700|GO:0006355
Amo02g1242 181 MobiDBLite consensus disorder prediction 25 41 - -
Amo02g1242 181 ProSitePatterns Zinc finger Dof-type signature. 63 99 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1242 Amo-Chr2 24963014 24963742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1242 9 181 C2C2-Dof Transcription Factor Family AT2G34140 50.000 2.36e-50 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo02g1242 zf-Dof 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1242 - - aip:107634834 356.681