Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0877 ATGGGTTTGAGTTCTAAGCAGGTTTCAAGTACAGGACTTGATTGGAACAAGGCCTTGTTGCAATCATCACAAAACTTGGAGTTACCATCAAAGATTACTACTATGAAGAAACAACAACAACAACAACAACAACAACAGCAACAACAAATTCAGCAGCAGCAACCAATATTAGAGCCTTTGAGGTGTCCAAGATGTGATTCAACAAACACAAAGTTTTGTTACTACAACAATTACAACAAATCTCAGCCTCGCCATTTCTGTAGAGCTTGCAAGAGGCACTGGACTAAAGGTGGAACCCTCCGCAATGTTCCTGTTGGAGGTGGAAGAAAGAATAAGAGACCAACCAAGAAATCAACAACCACTACTTCTATTAGCACCACCACCACTACCACTGTTACCACCTTAAATGGTGGTGGTGGAAAAATGGAAGTTCAACCTCAGAGTAATCGTCCTCTTCCTCCTCCTCCTCCTACTCTTTACCAATCTATGATTCGTCCACCACCCTTGCTACCACAACAGAATAATAATAATCTATCAGAAGTTAAGGACTTTGGTGGTAGTGGAATGTTTCTGAGTTCATCATCATCAGCTTTGAATCTTCCTCAGAGTCAAAGTCTAARCTTTCCCTTCTCAACAYCATCAAGTTCTAGTTTTGATGCAAACCCATGTTCAGTTTCAGCCTCCAATATTTATAGCTATGGTGGAGAAGAGTTTAAGACAATGGAGGAGACAACCATCAATGGTACTAACACACACCTATGGGAGATTCCATTACCTGCTACAACAACAAGTGTTGCTATGGAAATGCCTTCAAATTATTGGGGTTGGGAGGACCTTGATCCTTTGGTCTCAACTGATCTAAATGTTCCTTGGGATGATTCTGATATCAAACCTTGA 897 0.408 MGLSSKQVSSTGLDWNKALLQSSQNLELPSKITTMKKQQQQQQQQQQQQIQQQQPILEPLRCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRPTKKSTTTTSISTTTTTTVTTLNGGGGKMEVQPQSNRPLPPPPPTLYQSMIRPPPLLPQQNNNNLSEVKDFGGSGMFLSSSSSALNLPQSQSLXFPFSTXSSSSFDANPCSVSASNIYSYGGEEFKTMEETTINGTNTHLWEIPLPATTTSVAMEMPSNYWGWEDLDPLVSTDLNVPWDDSDIKP* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0877 298 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 39 220 IPR045174 GO:0003700|GO:0006355
Amo02g0877 298 MobiDBLite consensus disorder prediction 30 52 - -
Amo02g0877 298 MobiDBLite consensus disorder prediction 148 164 - -
Amo02g0877 298 MobiDBLite consensus disorder prediction 101 182 - -
Amo02g0877 298 Pfam Dof domain, zinc finger 60 112 IPR003851 GO:0003677|GO:0006355
Amo02g0877 298 ProSiteProfiles Zinc finger Dof-type profile. 60 114 IPR003851 GO:0003677|GO:0006355
Amo02g0877 298 MobiDBLite consensus disorder prediction 117 143 - -
Amo02g0877 298 MobiDBLite consensus disorder prediction 167 182 - -
Amo02g0877 298 ProSitePatterns Zinc finger Dof-type signature. 62 98 IPR003851 GO:0003677|GO:0006355
Amo02g0877 298 PANTHER OS06G0284500 PROTEIN 39 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0877 Amo-Chr2 12941516 12943324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0877 50 127 C2C2-Dof Transcription Factor Family AT5G60200 65.823 1.72e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo02g0877 zf-Dof 5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0877 - - gmx:778119 261.151