Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2487 ATGGGTTTCTCCTCTCTCCACGTCTGCATGGATTCATCAGCATCCGATAATAATTGGCTTCAGGGCACAATTAACGAGGAGGGTAGTACAGGGGTGGATGATTCTTCTTGTCCTTCCCCAACAGGGGACATGATGATGATTGCATGCTCGAACAAGCTTCCAACAATGATCATAGAAGGAAGTAGTAGTAGAAGACTAATGACAAGACCCCCACAAGACCAACTAGCTCTAAAGTGTCCAAGGTGTGAGTCAACACACACAAAGTTCTGTTACTACAACAACTACAGCCTCTCACAGCCAAGGTACTTCTGCAAATCTTGTAGAAGGTATTGGACCAAAGGTGGCACTCTTAGGAACATCCCTGTTGGTGGTGGTTGTAGAAAGAACAACACCAACAAGAAATCCTCTTCTAATTCCTCCAAGAAATCATCCAATAATAACGACAACAATGATCAACCATCACCACTTCCTATTAGTGTTAATATTAATAATCAAAACCAACCACATTACCCTTCTAATAATGGTGGTTTCCCAGATCTGCATCAATTCTCCTCTAACATGAACAGTTTGTTTGGGATGAGTAGTATTGGTGGAGGGTTATTGGGAAACCCTAACTTCATGTTTGAGAATAACGCTAGGCCGTTGGACTTCATGATGGAGAGTGGTATCATTAAGAGTGGTTCTAGGAGCTTTGATTTCATTGGAAATAGTGATCATCATCATCATTTGATGATGAATGGTGGCGGTTACAATTTGATGACGTCATCATCATCACCAAATTATCAAGGACTTTGCTCTTCAGCATTTGGAGGAAATAATAATAATATGTCACTTGATGGAGGGAACAATCACAACAACAACAGCAACAATACTGGGAGTTACAACATTATGGGATCTTGTCAGAGATTGATGTTACCATATGATGATTCAGGTGACAATGGCAATCAAAATAGTTTGATTGATGTGAAGCCAAACCCTAGGCAATTGTTGCCCCTTGATGGAAAAGAGACATTTGGGTCATGGACTACTACAGGAATGATTAACAGCTATGGATCTTCCGCAACGAACCCTTTGGTCTAG 1080 0.4102 MGFSSLHVCMDSSASDNNWLQGTINEEGSTGVDDSSCPSPTGDMMMIACSNKLPTMIIEGSSSRRLMTRPPQDQLALKCPRCESTHTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNNTNKKSSSNSSKKSSNNNDNNDQPSPLPISVNINNQNQPHYPSNNGGFPDLHQFSSNMNSLFGMSSIGGGLLGNPNFMFENNARPLDFMMESGIIKSGSRSFDFIGNSDHHHHLMMNGGGYNLMTSSSSPNYQGLCSSAFGGNNNNMSLDGGNNHNNNSNNTGSYNIMGSCQRLMLPYDDSGDNGNQNSLIDVKPNPRQLLPLDGKETFGSWTTTGMINSYGSSATNPLV* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2487 359 MobiDBLite consensus disorder prediction 121 178 - -
Amo01g2487 359 PANTHER DOF ZINC FINGER PROTEIN DOF5.6-LIKE 32 325 - -
Amo01g2487 359 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 32 325 IPR045174 GO:0003700|GO:0006355
Amo01g2487 359 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
Amo01g2487 359 MobiDBLite consensus disorder prediction 125 178 - -
Amo01g2487 359 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Amo01g2487 359 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2487 Amo-Chr1 84384120 84386106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2487 1 218 C2C2-Dof Transcription Factor Family AT5G62940 46.491 1.93e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo01g2487 zf-Dof 2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2487 - - aip:107631971 662.914