Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1578 ATGGGTTTTTCCTCTCTTCACGTCTGCATGGAATCATCAGATCACTGGCTCCAGGGCACAATTCACGAGGAATCTGGTGGATTGGATTCATCTTCACCATCAGGAGACATGCTTACATGCTCAAGGCCATTGATAGAGAGGAGGCTAAGACCACCACATGATCTAGCCCTAAAGTGCCCTAGATGTGACTCCACACACACCAAGTTCTGCTACTACAACAATTACAGCCTCTCTCAGCCAAGGTACTTCTGCAAAACTTGCAGAAGGTACTGGACCAAAGGTGGTACTCTTAGGAACATCCCTGTTGGTGGTGGTTGCAGAAAGAATAAGAAAGTCTCCAAGAAATCCAACAATAATAATGACCCATCACACAGTAATAACCAAAACCACCAGCCATTATTATTACAGCCTGCTTCAGGAATAGCCACCTCTTATCACCCTAAAGACCACCTTCAACTTTCTTTCCCAGATGCTGCACAGTTTTCTCACATTGGTAACTTACTGGGAAACCCTAATTTCATGCTTGAGAATAACCCTAGGCCTATTGACTTCATGGAAAGTAAGCTGGAAGGGATAATTGGGAGTACTTCTTCTAGAAACTTCCATTTTCTGGGAAACGGTGACATGGGTATGGGAATTGGGGCTGGAGACATTAATGGCCATCATCACAATGGGTTGCCACCAAATTTTCACAGTCTTTGCTCTCCTTCAGGATTTATGGGCATTTCATCATCATCTTTTGATGGTAATAATAACAATAATAGTGGGACGAATTATAATATCATGGACTCTTCTTCTTGCCAGAGACTGATGCTGCCATATAATGAGGACCCAAATGATGCCACTGATGTGAAACCAAACCCTAAGCTTTTGTCTCTTGACTGGCAGGACCAGGGTTGCTCCGATGCTGGAAAAGAGTCGTCGGCGTTTGGGTATCTTAACGGTCTAGGATCATGGACCGGCATGATCAACGGCTACGGTTCATCCACGACGACAAACCCTCTGGTCTAA 1011 0.4461 MGFSSLHVCMESSDHWLQGTIHEESGGLDSSSPSGDMLTCSRPLIERRLRPPHDLALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSKKSNNNNDPSHSNNQNHQPLLLQPASGIATSYHPKDHLQLSFPDAAQFSHIGNLLGNPNFMLENNPRPIDFMESKLEGIIGSTSSRNFHFLGNGDMGMGIGAGDINGHHHNGLPPNFHSLCSPSGFMGISSSSFDGNNNNNSGTNYNIMDSSSCQRLMLPYNEDPNDATDVKPNPKLLSLDWQDQGCSDAGKESSAFGYLNGLGSWTGMINGYGSSTTTNPLV 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1578 336 ProSitePatterns Zinc finger Dof-type signature. 59 95 IPR003851 GO:0003677|GO:0006355
Alju13g1578 336 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 47 219 IPR045174 GO:0003700|GO:0006355
Alju13g1578 336 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
Alju13g1578 336 MobiDBLite consensus disorder prediction 102 132 - -
Alju13g1578 336 Pfam Dof domain, zinc finger 56 111 IPR003851 GO:0003677|GO:0006355
Alju13g1578 336 MobiDBLite consensus disorder prediction 116 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1578 Alju-ChrAlju13 34050731 34052227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1578 1 190 C2C2-Dof Transcription Factor Family AT5G62940 48.696 1.87e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Alju13g1578 zf-Dof 2e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2552 06 52538887 52540139 Alju13g1578 13 34050731 34052227 PCT