Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0398 ATGCCGAATCAAAAATCCACCCTGCAAAGCACTATCCTCTTGTTACTTTTGCAGGTTTTGAATTTGATCAATGTCGCTCATGTCAGGTGCAAATCTACAATCGAGCCCTGCTCCAACTCTGACTCCTGCAATGCTCTGCTCGGATATACTCTCTACACTGACCTAAAGGTCTCTGAGGTGGCCTCCCTCTTTCAAATCGACCCCATTGCTCTTCTTACTGCCAATGCCATTGACATTTCTTATCCCGACGTGGAGCATCACATCCTTCCCTCTCGGCTCTTCCTCAAAATCCCTATTACTTGTTCGTGTGTTGATGGAATTCGCAAATCAGTAACGACCCACTACAAAACTCGGCCCTCTGATACTCTCCCTTCGATTGCGGATTCGATATATGGAGGTCTGGTGTCTGCTGACCAGCTTAGGGAAGCCAATTCGATAAGTGACCCTTCGGTACTGGATGTGGGTCAGAATCTTGTCGTGCCGCTTCCATGCACTTGCTTCAACGGTACCGATAACTCTTTGCCTGCAATCTACCTGTCGTATGTGGTCCAGCCAATCGATACTTTGGCTGCAATTGCGGCGAGGTATTTCACTACCCTGACTGATTTGATGAACGTCAATGCCATGGGAAGTTCAGCTATCGACGATGGCGATATTCTCGCTATACCGATACCCGCTTGCGCATCAAATTTCCCAAAATATGCCGCTGATCGTGGTTTGATTGTCCCTAACGGAAGCTATGCTATCACAGCGGGCCACTGTGTGCTATGTAGCTGTGGGCCACGAAATTTAGATTTATACTGTATGCCTGCTTCCCTGGCTGTTTCTTGTTCCAGCATGCAATGTAAAAGAAGCAATCTTATGCTCGGAAATGTTACAGTGCAACAGGGTAGTGGTGGTTGCAGTGTTAATTCTTGCAATTATGACGGTTTTGCTAATGGCACCATATTAACAGCATTGTCTACATCTCTTCAACCTCGATGCCCAGGGCCGCAGCAATTTCCTCCATTCACAGCACCGCCTACTACTGTTCCGAGAACGTCAATATTTGCACCAGCACCGTCACCTCTGTCAGGTGGAGCTGGTCCTTTATCCCCCAAATCATCAGTAGTGCCAGCGTCGGGGTCGTTTCCAGGGGTCCAACCAGCAAATGGCCCTATTAGCGGCCTTACTTCTGGTGCTTCCTGTGCTTGCTCTTTGTTGAATCCTTTGCCTGCTTTGACATCTGCGCTTGTGTTTTCGCTTGTCAAGTTAATGATCTCTATGGTATTGTAA 1275 0.4776 MPNQKSTLQSTILLLLLQVLNLINVAHVRCKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANAIDISYPDVEHHILPSRLFLKIPITCSCVDGIRKSVTTHYKTRPSDTLPSIADSIYGGLVSADQLREANSISDPSVLDVGQNLVVPLPCTCFNGTDNSLPAIYLSYVVQPIDTLAAIAARYFTTLTDLMNVNAMGSSAIDDGDILAIPIPACASNFPKYAADRGLIVPNGSYAITAGHCVLCSCGPRNLDLYCMPASLAVSCSSMQCKRSNLMLGNVTVQQGSGGCSVNSCNYDGFANGTILTALSTSLQPRCPGPQQFPPFTAPPTTVPRTSIFAPAPSPLSGGAGPLSPKSSVVPASGSFPGVQPANGPISGLTSGASCACSLLNPLPALTSALVFSLVKLMISMVL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0398 424 CDD LysM 180 222 IPR018392 -
Alju08g0398 424 ProSiteProfiles LysM domain profile. 113 160 IPR018392 -
Alju08g0398 424 ProSiteProfiles LysM domain profile. 179 222 IPR018392 -
Alju08g0398 424 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 12 332 - -
Alju08g0398 424 Gene3D LysM domain 170 231 IPR036779 -
Alju08g0398 424 CDD LysM 113 160 IPR018392 -
Alju08g0398 424 SMART LysM_2 114 161 IPR018392 -
Alju08g0398 424 SMART LysM_2 180 223 IPR018392 -
Alju08g0398 424 SUPERFAMILY LysM domain 179 224 IPR036779 -
Alju08g0398 424 Gene3D LysM domain 107 169 IPR036779 -
Alju08g0398 424 Pfam LysM domain 181 223 IPR018392 -
Alju08g0398 424 Pfam LysM domain 115 161 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0398 Alju-ChrAlju08 2853178 2855295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0398 31 401 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 71.314 0.0 546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g0398 08 2853178 2855295 Alju08g0398 08 2853178 2855295 ECH