Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2552 ATGGATTTTTCTCCTCTTCACGAGCACGTCTGCATGGAATCTTCGGATCACTGGCTTCAGGGAGCAGTTCAAGAGGAATCTGGAGGAGTAGCAATGGATTCTTCATCTTCGTCTCCACCATTGATGGAGAGGAGGGTAAGGCCAGCCCCAACAGACCAAGCTTTGAAGTGTCCGAGGTGTGATTCGACAAATACCAAGTTCTGTTACTACAACAACTATAGTCTCTCTCAGCCAAGGTACTTCTGCAAAACTTGCAGAAGGTACTGGACTAAAGGAGGCACATTGAGAAACATCCCAGTAGGTGGAGGTTGCAGAAAGAACAAGAAAGTCTCATCCAAGAAACAAAACGACGTCGTTCACTCCCAGTCGTTGGAATTACCCAATAATAAAGATCTTCTTCAACTCACAGCAGCCTCTAGTTTCCCAGATCATCATGCTATTCATTTTCCCCATTCAATGGGACTAATGGTGGAGAATAATTCTCCCAGGCTCATGATAAATAATGTTATGGGAAATATTGGTGATACTAGAGCGAATATTGCTGATCAGGTAAATTATAGCCATAATGGGTTATTGGCACAGAATTATTTCCAGGGTTTTGGAGGAAATATGTGTTACATTGATGGCTATAATAGTAATGGTGGGACTTATAGCACAATGGACTCTTTTTACCATGGAAATGATGAGGATCAAAATGTTGATGCAATTATTCATGATGTGAAGCCAAATCCTAAGATGTTGTCTCTTGAATGGCAAGACCACCACCAAGGTTGTTCTGATGCTGGGAAAGATCCTTTTGGGTATATCAACACCACTACGTTGGGATCATGGACTGGTATGATCAATGGTTATGGACCCTCCACAACGAACCCTCTGATTTGA 882 0.424 MDFSPLHEHVCMESSDHWLQGAVQEESGGVAMDSSSSSPPLMERRVRPAPTDQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKQNDVVHSQSLELPNNKDLLQLTAASSFPDHHAIHFPHSMGLMVENNSPRLMINNVMGNIGDTRANIADQVNYSHNGLLAQNYFQGFGGNMCYIDGYNSNGGTYSTMDSFYHGNDEDQNVDAIIHDVKPNPKMLSLEWQDHHQGCSDAGKDPFGYINTTTLGSWTGMINGYGPSTTNPLI 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2552 293 MobiDBLite consensus disorder prediction 26 49 - -
Alju06g2552 293 Pfam Dof domain, zinc finger 52 109 IPR003851 GO:0003677|GO:0006355
Alju06g2552 293 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
Alju06g2552 293 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
Alju06g2552 293 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 42 183 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2552 Alju-ChrAlju06 52538887 52540139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2552 32 112 C2C2-Dof Transcription Factor Family AT5G60200 71.605 8.15e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Alju06g2552 zf-Dof 5.1e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2552 06 52538887 52540139 Alju13g1578 13 34050731 34052227 PCT