Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2095 ATGAGCGGTCTTGGAGAAATGTCTCATAAGGATCTGGTAATCAAGCTATTTGGCAGGAAGATTCCCTTACCGGAATGTCAGATTCCGGTGACCTCTCCAATGGCTCCTCAGATTCCGGCCAACTCCAGAACCATGGATGCTTGCAGTAGCTCGAAGAAAACAGAAGTGGAAAGAGTTCGTGCAGAAAACTCAGAGCAACAAGAGAGTGCCTCTGAGTCAGCGGCAAGTAAAGAAGGGTCCCAAAACAATCAGCTAGAAAATGAGCCCAAAGCCAATCCCAAGACTATGGAAGATAGAGTGGAAACTAGCAGCACAGATCAAGATAAATCATTTAAGAAACCAGACAAGATTCTTCAGTGTCCACGATGCAACAGTTTGGACACAAAGTTTTGTTATTTCAATAACTACAATGTCAATCAACCTCGACATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGTGGAACAATGAGGAATGTTCCGGTGGGCGCTGGGAGACGAAAGAACAAGCACCTAGCCTCTCAGTTTCGCCACATCATAGTGTCCTCTGATGGAATTTCAACCTCTAGGTTGGAAACCACAGACTCATCTAGTCACCAACTTATCTCATCTCCTGAATCTTCAACTGCTTTCAGGTCGTCAATGGCAATGGATAATAATGGTATTGTACTGAAATTTGGTCCAGATGCCCCTCCTCTCTGTGAATCCATGGAGACAATGCTTAATATTGGAGACCAGAAAAGGAAAGTTGATGCAGAAAATGGGAAAGAACAATCTTTATCTGGATCTTCAGTAGCAAATAGTAGTGGTACAGAACTTGTCATGCAAAAGGAGCAGTGTGTTTCTAGTCAGCTTGGCACATCAAATCAAATGCAATGTTACCCTGTTCCTCCACTGTTGTTTCCCTGGAATCCAGATTGGAACAATGCTGTTTCTATGGCTGCAATTCATCAATCTTCGCCGCCAATTCAGTGGTATCCTACACCGTTGGTGACAGTTCCCGGCATGTGCCCACCTGGCATTCCTTTACAATATGCACCACCACCATATTGGTCTGCCGGCACCGGGACAGTCTCAATAGGATCTAATGGTTGCCTTTCGCCATCATCGTCCACAAGTAATAGTTGCTGCTCAGGAAATGGCTCTCCAACTTTGGGAAAACATTCTAGAGATACAGTCTTGGCAGATGAAGAGAAGTCAGAGAAGTGTGTTCTGGTTCCCAAGACTCTCAGGATTGATGATCCAAATGAAGCTCCAAAAAGTCCTATATGGGCTACATTAGGTATAAAGCCTGACAAGACGGAGTCTGAATCAAAGAGATTGGAAGCTGAAGGAGATGGAAAAGACCGTGTGTTGGGTGTTTCTCAAATTTTAGAAGCTAACCCAGCTGCTATTTCCAGGGCGCATGCATTTCAGGAGGGCATACAATGA 1434 0.4463 MSGLGEMSHKDLVIKLFGRKIPLPECQIPVTSPMAPQIPANSRTMDACSSSKKTEVERVRAENSEQQESASESAASKEGSQNNQLENEPKANPKTMEDRVETSSTDQDKSFKKPDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQFRHIIVSSDGISTSRLETTDSSSHQLISSPESSTAFRSSMAMDNNGIVLKFGPDAPPLCESMETMLNIGDQKRKVDAENGKEQSLSGSSVANSSGTELVMQKEQCVSSQLGTSNQMQCYPVPPLLFPWNPDWNNAVSMAAIHQSSPPIQWYPTPLVTVPGMCPPGIPLQYAPPPYWSAGTGTVSIGSNGCLSPSSSTSNSCCSGNGSPTLGKHSRDTVLADEEKSEKCVLVPKTLRIDDPNEAPKSPIWATLGIKPDKTESESKRLEAEGDGKDRVLGVSQILEANPAAISRAHAFQEGIQ 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2095 477 Pfam Dof domain, zinc finger 115 172 IPR003851 GO:0003677|GO:0006355
Alju03g2095 477 MobiDBLite consensus disorder prediction 66 90 - -
Alju03g2095 477 PANTHER CYCLIC DOF FACTOR 2 10 474 IPR045174 GO:0003700|GO:0006355
Alju03g2095 477 MobiDBLite consensus disorder prediction 34 49 - -
Alju03g2095 477 MobiDBLite consensus disorder prediction 50 65 - -
Alju03g2095 477 MobiDBLite consensus disorder prediction 31 113 - -
Alju03g2095 477 ProSitePatterns Zinc finger Dof-type signature. 120 156 IPR003851 GO:0003677|GO:0006355
Alju03g2095 477 ProSiteProfiles Zinc finger Dof-type profile. 118 172 IPR003851 GO:0003677|GO:0006355
Alju03g2095 477 MobiDBLite consensus disorder prediction 249 269 - -
Alju03g2095 477 MobiDBLite consensus disorder prediction 91 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2095 Alju-ChrAlju03 48327420 48329802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2095 7 476 C2C2-Dof Transcription Factor Family AT3G47500 36.473 4.25e-71 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Alju03g2095 zf-Dof 2.7e-32 No_clan