Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1213 ATGGGTTTGAGTTCTAAGCAGGTTTCTAGTAGTGGGATTGGTTGGAACCAGAACTTGTTGCAAGATCAGAAGTTGGAGCTCCCTAAACCTCCATTGATGAGGAAACAGCAACAACAACAGCAACAGATTCAGTCATCTCATCAGCAATCATCATCATTATCATCGGAGGCTTTGAAGTGTCCGAGGTGTGATTCGATCAATACCAAGTTCTGTTACTACAACAACTACAACAAGTCTCAGCCTCGCCATTTCTGCAGAACCTGCAAGAGGCACTGGACTAAAGGTGGCACCTTGCGTAATGTCCCAGTCGGTGGCGGCCGGAAAAACAAACGCCTCAAGAAATCATCATCATCATCATCCACCCCCATCTCTTCCGCCGCCGCCTCAGCCTCCGGCATGGCAATTCAGAGTTCCCTTCAAAGGCCAAGTAGTAATAATCTTCCTTTGCCTTCATCGTCCTCTGCCTCTCTGTTTCAGTCTCTGATTCCGTCACAACCGTCGACCTTGCTGCTTCCTCCTTCTCATCAGAATCTGATGAACCCCAGAGACTCACAACAACAAAGTAAAGATTTTGGAATTGGGAATTGTACCAGCAGCTTCTTGACTTCGACTTTGCCTCTCCTTTCTCATCAAAATCAGAGCTTTATCTTCCCTTTCTCATCAAGCTCCTCTGCCTCTTTTGAGACTAATCCATGCTCTGTTTCAACCTCTCTGAGATCCTCAAGTGTTTACAACAACATTAATAACTACGGCCGAGAGTTGAAGACAATGGAGGAGCCAACCCCAACACAGACACAGACACAGCCATGGGAGATACCTTCGACAAGCGTAGCAGGCCATACAGAAATGTCAAACTACTGGACTTGGGAAGACCTCGATTCGTTGGTCTCAACTGATCTCAATGTTCCCTGGGATGATTCTGATTTAAAACCCTGA 936 0.4647 MGLSSKQVSSSGIGWNQNLLQDQKLELPKPPLMRKQQQQQQQIQSSHQQSSSLSSEALKCPRCDSINTKFCYYNNYNKSQPRHFCRTCKRHWTKGGTLRNVPVGGGRKNKRLKKSSSSSSTPISSAAASASGMAIQSSLQRPSSNNLPLPSSSSASLFQSLIPSQPSTLLLPPSHQNLMNPRDSQQQSKDFGIGNCTSSFLTSTLPLLSHQNQSFIFPFSSSSSASFETNPCSVSTSLRSSSVYNNINNYGRELKTMEEPTPTQTQTQPWEIPSTSVAGHTEMSNYWTWEDLDSLVSTDLNVPWDDSDLKP 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1213 311 Pfam Dof domain, zinc finger 56 110 IPR003851 GO:0003677|GO:0006355
Alju03g1213 311 MobiDBLite consensus disorder prediction 33 54 - -
Alju03g1213 311 MobiDBLite consensus disorder prediction 169 191 - -
Alju03g1213 311 ProSitePatterns Zinc finger Dof-type signature. 60 96 IPR003851 GO:0003677|GO:0006355
Alju03g1213 311 ProSiteProfiles Zinc finger Dof-type profile. 58 112 IPR003851 GO:0003677|GO:0006355
Alju03g1213 311 MobiDBLite consensus disorder prediction 96 127 - -
Alju03g1213 311 MobiDBLite consensus disorder prediction 21 54 - -
Alju03g1213 311 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 37 231 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1213 Alju-ChrAlju03 40666615 40667550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1213 57 200 C2C2-Dof Transcription Factor Family AT5G60200 44.737 2.68e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Alju03g1213 zf-Dof 1.2e-31 No_clan