Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g0204 ATGTCGAACAACACAAGCGGCGACAGTGGAAGCTTCTCGACAGAGAACGCCGGAGAAGGTGGCGCCAAACGGCCGTCGGAGGTACTTGGTCAGTTTCACAGTCCAAATTCTCTCACTTCAACGACGACAACTAACAGCAATGGTTCCAACACACCTCCACCTCCACCTCCTAAGAAAAAGAGAAACCTACCAGGAAATCCAGATCCAAGCGCTGAGGTGATAGCTCTATCACCAAACACCCTAATGGCCACAAACCGATTCGTCTGTGAGATTTGCAACAAAGGGTTTCAGAGGGATCAAAACCTGCAATTGCACCGTCGAGGCCATAACCTGCCGTGGAAACTCAAGCAAAGAAGCACCACAGAAGTTCGAAAGAGGGTCTACGTTTGTCCTGAACCATCATGCGTCCACCACAACCCAGCCCGAGCACTTGGTGATCTCACAGGCATTAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGACAAATGCTCCAAGAAATACGCCGTCCAATCTGACTGGAAAGCCCACTCTAAGATCTGTGGAACCAGGGAATACAAATGTGACTGTGGCACCGTCTTTTCCAGGAGAGATAGCTTCATCACGCATAGAGCTTTCTGCGACGCACTGGCTGAGGAGAACAACAAAGCCAATGAAAGACAAACAATGCAAGGAATGAGCCCGGGCTTTAGGCCGGGGCATCAAATTCAGAACCTGGTTTCTTCATTACCACTCAATAATACCAATAATATCGTCCCGAACCCACAAGTTGGGAATATGGATAACAACGATAACAAGCATCCAATGTCGTCGCTGCTTCAGGAGCTCATGCCAATACCTGCAAATAAACCCTATAACCATAATATGAATAATGCAGGAAATCTATTCTCGAGAAGCCTCTCTTCTAATTCCTCAGCACCTCCTCTTCAACTAAATTCGAACTCATCACCCAACGTTTTCGAAGAAAATGGGCATCAACTACCACTACCGGCGGCGGCCGCAGCTTCCTCACAGCTCATGTCTGCGACGGCGCTGCTGCAGAAAGCCGCACAAATGGGTGCAACTGTGAGCAACTCGTCGTCCATGGCGCCGCCATCATATGGTCCAAACGGGCTTTCCTTCATGAACCACTACATGCAGAACGGGCAAGAGGATCATATCTCCGGTGTTGGTCAGTATTTAAATGCGAACGGGAGCATGGGAATGAACGGTGTGGATATGTTTAACGCTATCTTGGACCAAAGCAAGGCTTTCTCGAAGATGATAGAGGAGAATAATCGAGGTAATAATAATGGAGTTTTGCATGGTGGGGCAAGTGGAGGGGCTATTAACATTGGTGCAACTAAGGGAAGTGGGGATGTACTGACTCTGGACTTTATGGGAATTGGAGGAGGAGGAGGAGTAGGTTCACATGCAACTTTCTACGGAAACCAGCACCAACAGGGAGAAAAAGGTGCCATTGGAGGAGATGACATCTGGAGAAATTGGTCTATCAAGAATGCAGGATTTGAATCATTCTCAGCGGCAAGCAGCATCAACTGA 1554 0.4833 MSNNTSGDSGSFSTENAGEGGAKRPSEVLGQFHSPNSLTSTTTTNSNGSNTPPPPPPKKKRNLPGNPDPSAEVIALSPNTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSTTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTVFSRRDSFITHRAFCDALAEENNKANERQTMQGMSPGFRPGHQIQNLVSSLPLNNTNNIVPNPQVGNMDNNDNKHPMSSLLQELMPIPANKPYNHNMNNAGNLFSRSLSSNSSAPPLQLNSNSSPNVFEENGHQLPLPAAAAASSQLMSATALLQKAAQMGATVSNSSSMAPPSYGPNGLSFMNHYMQNGQEDHISGVGQYLNANGSMGMNGVDMFNAILDQSKAFSKMIEENNRGNNNGVLHGGASGGAINIGATKGSGDVLTLDFMGIGGGGGVGSHATFYGNQHQQGEKGAIGGDDIWRNWSIKNAGFESFSAASSIN 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g0204 517 MobiDBLite consensus disorder prediction 300 327 - -
Alju01g0204 517 SUPERFAMILY beta-beta-alpha zinc fingers 86 183 IPR036236 -
Alju01g0204 517 MobiDBLite consensus disorder prediction 49 63 - -
Alju01g0204 517 FunFam protein indeterminate-domain 12-like 66 134 - -
Alju01g0204 517 Gene3D Classic Zinc Finger 66 133 - -
Alju01g0204 517 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Alju01g0204 517 SMART c2h2final6 128 158 IPR013087 -
Alju01g0204 517 SMART c2h2final6 163 183 IPR013087 -
Alju01g0204 517 SMART c2h2final6 87 109 IPR013087 -
Alju01g0204 517 MobiDBLite consensus disorder prediction 1 71 - -
Alju01g0204 517 MobiDBLite consensus disorder prediction 300 326 - -
Alju01g0204 517 MobiDBLite consensus disorder prediction 30 48 - -
Alju01g0204 517 FunFam protein indeterminate-domain 5, chloroplastic-like 141 220 - -
Alju01g0204 517 Pfam Zinc finger, C2H2 type 87 109 IPR013087 -
Alju01g0204 517 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Alju01g0204 517 MobiDBLite consensus disorder prediction 1 16 - -
Alju01g0204 517 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 42 477 IPR031140 -
Alju01g0204 517 Gene3D Classic Zinc Finger 142 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g0204 Alju-ChrAlju01 1610735 1613274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g0204 40 366 IDZ Gene Family AT3G50700 54.252 2.55e-118 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju01g0204 zf-C2H2 0.0052 CL0361