Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g03501 ATGGATATAGACCTTAGGTTACCTTCTGGTGAACATGATAAAGAGGATGAAGAAACAGCTACAATTGATAACATATTGGATGGTGAAGAAAAATTGAATAATGGAGCTATGGAGGGGAGAAATATGGTTGATCCTGGTATGGAGTTACAAGCTCTAAATGGTGGTGATTTGAATTCGCCCACACTTGATATGGTAATATTCAAGGAAGATACTAATCTTGAGCCACTTTCTGGCATGGAATTTGAGTCTCATGGGGAGGCTTATTCATTCTACCAAGAATATGCTCGTTCAATGGGATTCAACACTGCAATACAGAATAGCCGACGCTCCAAAACATCAAGAGAATTCATAGACGCAAAGTTTGCTTGTTCTAGGTACGGAACAAAACGAGAATATGACAAATCGTTCAATCGACCACGTGCAAGACAGAGCAAGCCAGATTCTGAAAATTCAACCGGTCGAAGATCTTGTTCCAAGACTGACTGTAAAGCAAGTATGCACGTGAAAAGAAAACATGATGGAAAATGGGTTATACACAGTTTTGTGAAGGAGCATAATCATGAGCTTTTACCAGCCCAAGCAGTCAGTGAACAAACAAGAAGAATGTATGCTGCAATGGCCAGACAGTTTGCTGAATACAAGACTGTGGTTGGTCTCAAGAATGAAAAGAATCCATTTGATAAAGGACGGAATTTGAGCCTTGAATCAGGAGACGCTAAACTCATGCTGGATTTTTTTGTACAGATGCAAAATATGAACTCTAACTTCTTTTATGCAGTTGATATTGATGATGATCAAAGACTGAAAAATATTCTATGGATTGATGCTAAAAGTAGGCATGACTATACCAACTTTTGTGATGTAGTGTCATTTGATACCACCTATGTTAGAAACAAATATAAGATGCCTCTTGCACTTTTTGTTGGAGTGAACCAGCACTATCAATTTATACTACTGGGGTGTGCCTTAATATCAGATGAAAGTCCCACAACTTTTTCTTGGCTGATGCGGATGTGGCTGAAAGGAGTTGGTGGTCAAGTTCCAAAAGTGATGATTACTGAACATGACAAGACTTTGAAGTCAGTTATTGCAGATATATTCCCTAGTGCTTGTCATTGTGTCTCTTTATGGCATATTGTGGGTAAGATATCTGAAAATATGGCTCATGTAATTAAAAAACATGAGAAGTTTTTGGCAAAATTTGAAAAATGCATATACAGGTCATTGACCAGTGATGACTTTGAGAAGAGATGGTGGAAAATTGTTGATAGGTTTGAACTTCGAGAGGATGAATGCATGCAGTCACTATATGAAGATCGTAAGTTGTGGGCACCAACATTCATGAGGGATGTTTTCTTAGGTGGTATGTCTACTGTCCAACGATCCGAAAGTGTAAATTATTACTTTGACAAATATGTTCACAAGAAGACCTCTGTGCAAGATTTTGTTAAATTGTATGAAGCAATCTTGCAAGACAGGTACGAAGAGGAAGCCAAAGCAGATTCTGATACCTGGAATAAAGTAGCAACATTGAAAACACCTTCACCGTTGGAGAAGAGTGTCGCAGGGGTTTACACGCATGCTGTATTCAAGAAGATTCAAGCTGAGGTTGTTGGTGCAGTTGCTTGTCATCCTAAAGCTGACAGACAAGATGAGACCACTATTATTCATAGGGTTCACGACATGCAATCAAATAAGGACTTCTTTGTTGTGGTGAATCAAGTAAAATCAGAATGGTCTTGTATATGTCGTTTATTTGAATATAGAGGCTATCTTTGTCGACACATATTGATTGTTCTGCAATATTCTGGCCATTCTGCAATCCCATCCCATTATATTTTGAAACGCTGGACCAAAGACGCAAAGGTCCGGAATATAATGGGAGAAGAGTCTGAACATATGCTGGCAAGGGTGCAACGATACAATGATTTATGTCAGCGAGCATTTAAACTGAGTGAAGAGGGATCTCTTTCACAAGAGAGTTACAGTATTGCAGTCCATGCACTGCACGAAGCACAAAAAAGTTGTGTGAGCGTTAATAATTCTGGCAAGAGTCCCATGGAAGTTGGTACATCAGTCACTCATGCTCAGCTTTCTACTGAAGAAGATACCCAAAGTAGAAATATGGGCAAATCAAACAAAAAGAAAAATCCAGCTAAAAAGAAAAAGCAAATTGCTCTTAAAGCTAAAAGGAATCTTCTTTTGCAGGACAAGTTCAGCACAAGAGCTGCAGTAACCCTTGATGGCTATTACGGCACACAACAACAGGTGCAGGGAATGTTGAACTTAATGGGACCGCGAGATGATTTTTACGGGAATCAGCAGACTCTTCAGGGACTGGGACCAATAAGTTCAATACCAACAAGTCACGACGGTTATTATAGTGCGCACCAGGGCATGCCAAATCTGGCGCAATTGGATTTTTTGCGAACAGGTTTCACATATGGCATCCGGGATGATCCGAATGTAAGAGCAGCACAGTTGCATGAGGATCCGTCGAGGCATGCATGA 2511 0.3982 MDIDLRLPSGEHDKEDEETATIDNILDGEEKLNNGAMEGRNMVDPGMELQALNGGDLNSPTLDMVIFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQSKPDSENSTGRRSCSKTDCKASMHVKRKHDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKTVVGLKNEKNPFDKGRNLSLESGDAKLMLDFFVQMQNMNSNFFYAVDIDDDQRLKNILWIDAKSRHDYTNFCDVVSFDTTYVRNKYKMPLALFVGVNQHYQFILLGCALISDESPTTFSWLMRMWLKGVGGQVPKVMITEHDKTLKSVIADIFPSACHCVSLWHIVGKISENMAHVIKKHEKFLAKFEKCIYRSLTSDDFEKRWWKIVDRFELREDECMQSLYEDRKLWAPTFMRDVFLGGMSTVQRSESVNYYFDKYVHKKTSVQDFVKLYEAILQDRYEEEAKADSDTWNKVATLKTPSPLEKSVAGVYTHAVFKKIQAEVVGAVACHPKADRQDETTIIHRVHDMQSNKDFFVVVNQVKSEWSCICRLFEYRGYLCRHILIVLQYSGHSAIPSHYILKRWTKDAKVRNIMGEESEHMLARVQRYNDLCQRAFKLSEEGSLSQESYSIAVHALHEAQKSCVSVNNSGKSPMEVGTSVTHAQLSTEEDTQSRNMGKSNKKKNPAKKKKQIALKAKRNLLLQDKFSTRAAVTLDGYYGTQQQVQGMLNLMGPRDDFYGNQQTLQGLGPISSIPTSHDGYYSAHQGMPNLAQLDFLRTGFTYGIRDDPNVRAAQLHEDPSRHA 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g03501 836 MobiDBLite consensus disorder prediction 686 722 - -
Aip10g03501 836 MobiDBLite consensus disorder prediction 686 706 - -
Aip10g03501 836 Pfam SWIM zinc finger 575 602 IPR007527 GO:0008270
Aip10g03501 836 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 48 744 IPR031052 GO:0006355
Aip10g03501 836 MobiDBLite consensus disorder prediction 132 164 - -
Aip10g03501 836 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 48 744 - -
Aip10g03501 836 Pfam MULE transposase domain 288 380 IPR018289 -
Aip10g03501 836 Pfam FAR1 DNA-binding domain 89 191 IPR004330 -
Aip10g03501 836 ProSiteProfiles Zinc finger SWIM-type profile. 568 604 IPR007527 GO:0008270
Aip10g03501 836 SMART 26again6 579 606 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g03501 Aip-Chr10 133465007 133468442 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip10g03501 FAR1 1.2e-27 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g03501 10 133465007 133468442 Aip10g03501 10 133465007 133468442 ECH
Aip10g03501 10 133465007 133468442 Aip10g03501 10 133465007 133468442 PCT