Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02887 ATGGCTTTTTCTTCTCTGCACATCTGCATGGACTCACCAGATCACTGGTTCCAGGGAACAGTTCACGACGAGGTCTCCGGCGGCAGCGGCAGCGGTGGCATGGATTCTTCTGGCTCGCCATTATCCTCCTCCGGCGACATTATGAAATGCTCGGCAAGGCCAATGATGGAGAGAAGAATGAGACCCCCGCACGACCAAGCCCTCAAGTGCCCTCGCTGCGATTCAACCCACACCAAATTCTGTTACTACAACAACTACAGCCTCTCTCAGCCCCGCTATTTCTGCAAGACCTGCAGAAGGTACTGGACTAAAGGCGGCACCCTCCGCAACATCCCCGTCGGCGGCGGCTGCCGGAAAAACAAGAAACTCTCCTCCAATTCCAAGAAACACCACCAATCCAACAACAACAATAATAATGATCTTCATACTTCTCATAATAACAACCAATCACATTCTTATTCTACTTGCCCTAAAGATCTTCAGCTTTCTTTCCCCGATGTCCAATTTTCTCACCTCAGTAACATTATTCTTGGTGGTAACGTTAACCCTAATAATAGTAGCTTCATGGAGAGCAAGTTCCACGTTGGCATGCTTGAGAACAATCTTGTTAGGCCAATCGATTTCATGGAGAACAAGCTTGAAGGCATAATTGGGAGTGGTATTAATAGTTCTAGAAGCTTTGATTTCTTTGGGAATAATAATAGTAATGGCGGCTGCGACGAGAACAGCAATAACAACATCAACATGATGATGCTTGGTATGGCTAATAATGTTGGATTGGGACCTAACAATTTTCATGCACTTAATTGCTCTCCAATTGCATCATTTGGCGGCATGTCATCACTTAATGGCGGCGGTTGCGGCAACAGCAGTGTCAACAACATTGGATCATGGTTGTTCTGA 903 0.4629 MAFSSLHICMDSPDHWFQGTVHDEVSGGSGSGGMDSSGSPLSSSGDIMKCSARPMMERRMRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKLSSNSKKHHQSNNNNNNDLHTSHNNNQSHSYSTCPKDLQLSFPDVQFSHLSNIILGGNVNPNNSSFMESKFHVGMLENNLVRPIDFMENKLEGIIGSGINSSRSFDFFGNNNSNGGCDENSNNNINMMMLGMANNVGLGPNNFHALNCSPIASFGGMSSLNGGGCGNSSVNNIGSWLF 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02887 300 MobiDBLite consensus disorder prediction 30 46 - -
Aip10g02887 300 MobiDBLite consensus disorder prediction 129 154 - -
Aip10g02887 300 MobiDBLite consensus disorder prediction 113 154 - -
Aip10g02887 300 ProSiteProfiles Zinc finger Dof-type profile. 68 122 IPR003851 GO:0003677|GO:0006355
Aip10g02887 300 Pfam Dof domain, zinc finger 65 122 IPR003851 GO:0003677|GO:0006355
Aip10g02887 300 ProSitePatterns Zinc finger Dof-type signature. 70 106 IPR003851 GO:0003677|GO:0006355
Aip10g02887 300 PANTHER DOF ZINC FINGER PROTEIN DOF5.6-LIKE 31 273 - -
Aip10g02887 300 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 31 273 IPR045174 GO:0003700|GO:0006355
Aip10g02887 300 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02887 Aip-Chr10 123131619 123133240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02887 1 236 C2C2-Dof Transcription Factor Family AT5G62940 44.402 1.53e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aip10g02887 zf-Dof 1.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02887 - - aip:107624177 508.449