LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip10g01865	ATGCAAGGTCAAAGAAGGACAACTGGGTCATTCCCTGCTATTGTTGGTATGATGCAAGGGCCTAACTCGAGCGGCACTGATATGAATCATCAGTCTTCTTTGAATCATGTGCAAAGTACCGTAGATTTCCGGTTGTCAGATTATAGAGGGTCCACTGGCGAGACTGCTTGTTTACGAGCTACTGGTCCTAACGTACAGAGTTTTAGTGGCTGGAATACTGGTGAACCGAGTTCTAGACTGAATCTGATCAACCAAGTCAATGATGAAGGTCTAAAATCTGAACATGGTCCATCTTCATCATGTAGTGCTACTGCTGAGGATGGTCTCAGAACAGAGGAAAGGTCATTTGAACCAAATAATATGATTTTTCCAGTTAGTTCAAATACTAATCTACATGGAAATCATTCTAGAATTCAGCCTTCTTTTTTGCAAGGATCCAGCTCCAGTCATATAACCCAGAATGGTAATCTAGATATGGAGCACACAGCACAAGCTGCTAACCGTGGGAAAGGCATAGCAGCAAGTAGCAGTGTGAATCACAATGATAGTGGTGGATATGATAGAGAGCAAACAGCTTTCAGCAGTGCTTCATACAATCGTCATACTGGAACTTCATCCGAAAACCCTGGATTCATGACTTGGGGAAATAGTGGCAGTTCAAGTTCTGCTTTAGTTAATTGGGGTTCTTCCTGCAAGAGAAAGGCCCTTGAAGGTAGTTCTGGTCAACTGTGTACTGGAGGAAGCTCAAACTCTCTTTTACAATCCGAAAATGGATGCTGGCCCACTAATCCTGTTGATCTTAATGTTTCAAGCAGTTTAAATGTTTCAATGCCCTTAGAGGATGTTCCTGTCACTCTTCCTCCATTACAGCTGAACTTGAGAAGTGAAGTGAGACAAGGAGCAACTGATGCATTTCCCTTAATAAATGTCCCAGAAAATGTGGAAAGGCCTCTCAGAAACTTTGATAGGAGAATGGCCCATGTACAGCATCAGGAATCTATACCTCTCAATTTACCATCAGCAGTGAGTTCTAGGCATCATAATCATTCTTCTCCCCATCAAATACCTTGCTCCCACTCGTTTAATGATTCTTTGGAATTGAGGTTAACGCCTGGAGTAAATGCTGCCAATTCTGGTGCTCCTCAGAACCAGTCACCTCCCCTTAACATGCCTCCTTTTCCTTGGAATAGAGCTTCTAACCCTAGAGGGGCTAGAACTTCAACTTCTCATAACTCTGTAGAAAGAGTGGTACAGGAAGATTTTAATATAAGAATTTTTCCAAGAGAGAGTTCTGGGCACCCGACAAATGTACCTGCACCCACAGTACATGAACCAACACCTTGGCGTACATCCTCTGCTAATGCAAACAATTCTGGAGGTGTACCTACTACATCTTGGATGGGATCTAGTTCAAACATCGTTCCATTACCTAATCCCAGCTGGATTGTTAACCCTGAAGTCCCTACAGATAATCTGCAAAGATTGTCAGAGTTCAGTCCTTGGTCTCTTTTTCCATCAATTAGCTCAGCATCCAGTGTTCAGAATGGTCATTCTGCTCCATCTTCTTCAGGATCCTCTTCTATTACTCAGGGGTCCCGCAACAATCAGCCATATCTAAGAGCAGCATTGTTAATGGAAAGGAGGGGTGGTGATGTACTCTCTACTCCGCGAGCATTAACCGTTGACAATGAGGGAAGACGCCGACTAATATCTGAGATTCGCCAAGTCTTGATTGCAATGCGGAGGGGTGATAACTTAAGGGCCGAGGATTATATGCTTTTTGACCCTTTCATATATCATGGGATGGCTGAACTGCATGACAGGCACAGAGAAATGCGCCTTGATGTTGATAACATGTCTTATGAGGAATTGTTGGCATTGGAGGAGCGAATTGGAGATGTCAGCACTGGATTGAGCGAGGATGTCATTATGAAGTCAATGAAACAGCAAATATACATGTCTGTTATGGCGGAGTCTTCTACAGATCTTGAGCCTTGTTGTATCTGTCAGGAGGATTATACTGAGGGAGAGAATGTTGGCTCGCTAGATTGTGGACATGAATTTCACAGTAATTGCATCAAGCAATGGCTAATGCAGAAGAACCTTTGCCCCATTTGCAAAACAACAGGCTTAGCTACATGA	2142	0.4328	MQGQRRTTGSFPAIVGMMQGPNSSGTDMNHQSSLNHVQSTVDFRLSDYRGSTGETACLRATGPNVQSFSGWNTGEPSSRLNLINQVNDEGLKSEHGPSSSCSATAEDGLRTEERSFEPNNMIFPVSSNTNLHGNHSRIQPSFLQGSSSSHITQNGNLDMEHTAQAANRGKGIAASSSVNHNDSGGYDREQTAFSSASYNRHTGTSSENPGFMTWGNSGSSSSALVNWGSSCKRKALEGSSGQLCTGGSSNSLLQSENGCWPTNPVDLNVSSSLNVSMPLEDVPVTLPPLQLNLRSEVRQGATDAFPLINVPENVERPLRNFDRRMAHVQHQESIPLNLPSAVSSRHHNHSSPHQIPCSHSFNDSLELRLTPGVNAANSGAPQNQSPPLNMPPFPWNRASNPRGARTSTSHNSVERVVQEDFNIRIFPRESSGHPTNVPAPTVHEPTPWRTSSANANNSGGVPTTSWMGSSSNIVPLPNPSWIVNPEVPTDNLQRLSEFSPWSLFPSISSASSVQNGHSAPSSSGSSSITQGSRNNQPYLRAALLMERRGGDVLSTPRALTVDNEGRRRLISEIRQVLIAMRRGDNLRAEDYMLFDPFIYHGMAELHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDVIMKSMKQQIYMSVMAESSTDLEPCCICQEDYTEGENVGSLDCGHEFHSNCIKQWLMQKNLCPICKTTGLAT	713

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip10g01865	713	MobiDBLite	consensus disorder prediction	445	470	-	-
	Aip10g01865	713	SMART	ring_2	666	706	IPR001841	-
	Aip10g01865	713	MobiDBLite	consensus disorder prediction	89	106	-	-
	Aip10g01865	713	Pfam	Ring finger domain	666	707	IPR001841	-
	Aip10g01865	713	MobiDBLite	consensus disorder prediction	120	154	-	-
	Aip10g01865	713	MobiDBLite	consensus disorder prediction	17	34	-	-
	Aip10g01865	713	SUPERFAMILY	RING/U-box	644	709	-	-
	Aip10g01865	713	MobiDBLite	consensus disorder prediction	166	189	-	-
	Aip10g01865	713	MobiDBLite	consensus disorder prediction	169	189	-	-
	Aip10g01865	713	PANTHER	ZINC FINGER PROTEIN, PUTATIVE-RELATED	3	713	-	-
	Aip10g01865	713	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	3	713	IPR045191	GO:0061630
	Aip10g01865	713	MobiDBLite	consensus disorder prediction	512	533	-	-
	Aip10g01865	713	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	630	710	IPR013083	-
	Aip10g01865	713	CDD	RING-H2_TTC3	665	707	-	-
	Aip10g01865	713	ProSiteProfiles	Zinc finger RING-type profile.	666	707	IPR001841	-
	Aip10g01865	713	MobiDBLite	consensus disorder prediction	372	411	-	-
	Aip10g01865	713	MobiDBLite	consensus disorder prediction	89	154	-	-
	Aip10g01865	713	MobiDBLite	consensus disorder prediction	427	470	-	-
	Aip10g01865	713	MobiDBLite	consensus disorder prediction	1	34	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip10g01865	Aip-Chr10	53116273	53121691	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip10g01865	18	713	C3H Transcription Factor Family	AT2G15530	36.497	4.46e-108	342

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip10g01865	10	53116273	53121691	Aip10g01865	10	53116273	53121691	ECH
	Aip06g03772	06	135470490	135477326	Aip10g01865	10	53116273	53121691	ECH