Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01772 ATGCCCTCCTCCGACTCCGGCGAAAGCCGTCGATCAGCCAAGCCTCACAACACTTCCCTAGCCCCACCGCCGGCCGAGCAAGAGCACCTGCCATGCCCTCCCTGCGACTCTACTAATACCAAGTTCTACTACTACAACAACTACAACTTCTCCCAGCCTCGCCACTTCTGCAAGTCCTGCCGCCGCTATTGGACCGACGGCGGCACTCTCCGTGACATCCCCGTCGGCGGTGAAAGCCGTAAAAACGCCAAGCGCTCTCGCACCGTTCCTTCAGCCTCCACCGCCACAACCTCCTCCTCCGCGGGTGCGGCCGTCACCTCAGTTTCTTCTGTGACCCCGCTCACCATGGTTCCCGTGGCCGGGAACAACCACCCCGGAGCACCCGTGCAGTTCGGTGGATTAGTTGTGGATGGTGAAGCAAAGGGTAATAACGTGAGCTTGTGCGGTGGGAGCTTCACTTTGTTGCTGAGCAACACACAGCAGGGTCCTGGTGGGTTTCTGGCTCTGGGTGGGTTCGGGCTTGGTCTTGGGCCTGGGCTCGAAGATGTTGGATTTGGGATGGGGAGAGGCGGTTGGGCTTTCCCGGACATGGTGGCGGACGGAGGCAGCATTGGCGGCGGTGTTGCGGGCTCCGGTGTTGGGCACACGTGGGATAAATTGGATAATTTTTAA 672 0.5997 MPSSDSGESRRSAKPHNTSLAPPPAEQEHLPCPPCDSTNTKFYYYNNYNFSQPRHFCKSCRRYWTDGGTLRDIPVGGESRKNAKRSRTVPSASTATTSSSAGAAVTSVSSVTPLTMVPVAGNNHPGAPVQFGGLVVDGEAKGNNVSLCGGSFTLLLSNTQQGPGGFLALGGFGLGLGPGLEDVGFGMGRGGWAFPDMVADGGSIGGGVAGSGVGHTWDKLDNF 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01772 223 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
Aip10g01772 223 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Aip10g01772 223 PANTHER DOF ZINC FINGER PROTEIN DOF3.4 1 219 - -
Aip10g01772 223 MobiDBLite consensus disorder prediction 86 103 - -
Aip10g01772 223 MobiDBLite consensus disorder prediction 1 16 - -
Aip10g01772 223 MobiDBLite consensus disorder prediction 1 32 - -
Aip10g01772 223 MobiDBLite consensus disorder prediction 71 103 - -
Aip10g01772 223 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 219 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01772 Aip-Chr10 42351624 42352544 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01772 1 218 C2C2-Dof Transcription Factor Family AT5G66940 46.696 3.06e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aip10g01772 zf-Dof 2.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01772 - - aip:107620759 369.777