Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03699 ATGCCCTTCATTATTCTCTCTTCTTCACACCCTTCTTTGTTGACCGCCAAAGCCCTAAAACCTTCGATTCACGCCATGAAGGACCGCCCTACGCTGTCCTCTTATGGCGCCATTTACGTTCCCCCGCACCACCGCCTCCGCTCCGTCATCACTTCCGCCAATTACAACTCCTCCGCTCCCTCTGTAGCCAAGCTCCGGGATCACCATGGCGCAGCTCTAAACCCTAGACCCGTTGCTTCAGCTGCTCCTACCACTGTGCATCGCTCGCAAACGACGTTGCCGGAGCAAATTCCTGTCAAGGGGAATTCGCGCTTTGTTTCAGCTTACGACGACGTGGTTTCCGAGGAAGGCTCCGATCGTGAATTCGAGGCTCCCTCATTTCGGAGTGCTTCACCAAATGATAACGTTGATGAGTGGATGAGGAAGCTAACATTGCTCTTAAACGACAAGAGTAAGCAAGAGTTGTTGTCCAGGGAGAAAAAGGATAGGCGTGATTTTGATCAAATTGCGCTTTTGGCAAGCAGAATGGGGCTGTATAGCCACATGTATGCAAAGGTTGTTGTCTTCAGTAAGGTTCCACTTCCAAACTATAGATATGACTTGGACGATAGGCGGCCGCAGAGGGAGGTGAGCATGCCTATAACCTTGTTAAGGCGAGTTGATGCATACTTTGAGGAACACCTTACCCGAAAGTCCAAGATGAAGGAAAGCTTTTCAGATGTATCATTTACAAGATCAAGCAGTAACAGTAGTATTGGTACAGATGAAGGGCTTTTTGAGCACCCTGAGCCACTTGCATCTAGTAAGGCTGTTGGGGAGAAAATACTTAGGCGGAGGAGCTTGCAAATGCATGATCAGCAGCAAGCATGGCAGGAATCTCCAGAAGGAAGAAGAATGCTAGAATTTCGCAGGAGTCTCCCTGCTTATAAAGAGAAAAAAGCAATATTGTCTCTCTTATCAAGAAATCAGGTAGTTGTCATCTCAGGCGAAACAGGTTGTGGCAAGACAACTCAAATTCCACAGTTTATTTTAGAATCTGAGATAGAATCAGTTCGAGGAGCTGCTTGTAATATCATATGCACACAACCAAGACGCATATCAGCTATGTCTGTTTCTGAAAGGGTTGCCTACGAGAGAGGGGAGAAATTGGGTGAATCTGTTGGATATAAAGTTCGATTGGAGGGTATGAAGGGGAGAGATACCCATCTTCTCTTTTGCACCACGGGCATCTTATTAAGAAGATTGCTAGCTGATAGAAACTTAACAGGTGTAACTCATGTTATCGTGGATGAAATTCATGAGCGTGGGATGAATGAAGATTTTCTGCTTATCGTCCTTAAAGATCTCCTTCCTCACCGACCTGAAATGAAACTGATTTTGATGAGTGCTACCCTAGATTCAGAGCTCTTCTCTTCTTACTTTAATGGGGCACCAGTTATGAATATTCCGGGCTTCACATATCCCGTTAGAACTCATTTTTTGGAGGACATTCTTGAAATGACGGGCTACAGATTGACAACTTCTAATCAAATTGATGATTATGGTCAAGAAAGGATGTGGAAAATGAACAAACAGGTCCCAAGAAAGAGGAAAAGCCAAATTGCTTATGTTGTCGAGGATGCTATTAGAGCTGCTGATTTCAAAGATTACAGCCCACAGACACAGGAGTCTTTGTCGTGTTGGAATCCTGATTGTATTGGATTTAGTCTCATAGAATATATCCTATGCATGATATGTGAGAATGAAAGGCCTGGTGCTGTTTTAGTTTTTATGACTGGATGGGATGATATAAGCACTTTGAAAGAGAAGTTTTTGGCTCATCCTGTCTTAGGAGATCCAAATCGAGTTTTGTTGCTTACCTGTCATGGCTCAATGGGCAGTTCAGAACAGAGGTTAATATTTGAAGAACCCAAAGATGGAGTAAGAAAAATAGTGCTTGCAACAAATATCGCTGAAACGAGTATCACAATAAATGACGTTGTTTTTGTGCTTGACTGCGGAAAAGCAAAAGAAACATCATATGATGCACTGAATAACACGCCCTGTTTGCTTCCAACATGGATCTCTAAGGTTTCTGCCCAACAGAGACGAGGAAGAGCTGGTCGTGTTCAACCTGGAGTGTGTTACCATATCTATCCTAGATGTGTATATGATGCATTTGCTGAGTATCAATTGCCAGAAATTTTGAGGACACCCTTGCAATCTCTGTGTCTGCAAATAAAAAGTCTAAGACTTGGAAGCATACCTGAGTTCTTGTCTAGGGCTTTGCAGTCTCCGGAGATCCTTGCGGTACAAAATGCTATTGAGTATTTGAAAATAATTGGGGCTTTGGATGAGAATGAGAATTTGACTACTCTAGGGTCCTATCTGACAATGCTTCCTATGGAACCCAAACTTGGCAAGATGCTTATATTAGGGGCTATCTTCAATTGCCTGGATCCAATATTAACTGTGGCTGCTGGCCTTAGTGTGAGAGATCCTTTCCTAACACCACTGGACAAAAAAGATCTTGCAGAGGCAGCAAAATCTCAGTTTGCTGGAGCATATAGTGACCACCTTGCACTTATAAAGGCTTACGAGGGTTGGAAAGATGCAGAATTAGACATTGGAGGATGTGAATATTGCTGGAAAAATTTTCTTTCAGCACAATCAATGAAAGCTATTGATGCTCTTAGGAGAGAGTTCAGATGCCTGCTCAAGGATATTGGATTAGTTGATAGCAATACAGCCAACTGCAACTTGTGGAGCTGTGATGTGAATCTCATCCGGGCAGTTATTTGCTATGGTCTATATCCTGGAATTTGCGCTGTTGTGCACAATGAAAAGTCATTCTCTTTGAAAACAATGGAGGATGGTCAAGTGCTCCTATATTCGAACTCCGTCAATGCTCGGGAAACTAGAATTCCATATCCATGGTTACTTTTTAATGAGAAGATAAAAGTGAACTCTGTTTTCCTCCGCGACTCCACAGCTGTGCCTGATGCAGTGGTGCTTCTGTTTGGTGGGAACTTATTGAAAGGGGATGCTGATGGCCACTTAAAAATGTTGGGAGGATATCTGGAGTTCTTCATGGAACCTCCTGTTGCTGATCTGTACCAGTGTGTAAAGAGAGAACTTGATGACTTAATTCAAAGAAAACTACTTTTTCCAAAGATGAGCATACACTTGTATGATGAACTCCTATCAGCAGTGCGGTTGCTGATTTCCATAGACACATGTGAAGGCAAATTTGTATTTGGTCGTCGGGTCTTTAAACCAGCAAAGTCAACAGTGATGGCCACATCACATCCAGCATCGATTTCAAGGACTGAGAGTGGCCCTGGGGGTGATAATTCTAAAAGTCAGCTCCAGACCTTACTCACAAGAGCAGGATATGCTGCACCCAGCTACAAGACTAAACAATTGAAGAATAATCAGTTTCGGGCTACAGTTGAGTTCAATGGAATGCAGATAATGGGCCAACCCTGTAGCAATAAGAAAAGTGCAGAAAAAGATGCTGCAGCTGAGGCCTTGCAGTGGCTGATGGGTGGAAAACAGTCGGGCAGTGAGTATATCAGTCACATGTCCAAGTTGCTGAAGAAAAGTAAGAAGGATCACAACTGA 3603 0.4344 MPFIILSSSHPSLLTAKALKPSIHAMKDRPTLSSYGAIYVPPHHRLRSVITSANYNSSAPSVAKLRDHHGAALNPRPVASAAPTTVHRSQTTLPEQIPVKGNSRFVSAYDDVVSEEGSDREFEAPSFRSASPNDNVDEWMRKLTLLLNDKSKQELLSREKKDRRDFDQIALLASRMGLYSHMYAKVVVFSKVPLPNYRYDLDDRRPQREVSMPITLLRRVDAYFEEHLTRKSKMKESFSDVSFTRSSSNSSIGTDEGLFEHPEPLASSKAVGEKILRRRSLQMHDQQQAWQESPEGRRMLEFRRSLPAYKEKKAILSLLSRNQVVVISGETGCGKTTQIPQFILESEIESVRGAACNIICTQPRRISAMSVSERVAYERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLADRNLTGVTHVIVDEIHERGMNEDFLLIVLKDLLPHRPEMKLILMSATLDSELFSSYFNGAPVMNIPGFTYPVRTHFLEDILEMTGYRLTTSNQIDDYGQERMWKMNKQVPRKRKSQIAYVVEDAIRAADFKDYSPQTQESLSCWNPDCIGFSLIEYILCMICENERPGAVLVFMTGWDDISTLKEKFLAHPVLGDPNRVLLLTCHGSMGSSEQRLIFEEPKDGVRKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPTWISKVSAQQRRGRAGRVQPGVCYHIYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGSIPEFLSRALQSPEILAVQNAIEYLKIIGALDENENLTTLGSYLTMLPMEPKLGKMLILGAIFNCLDPILTVAAGLSVRDPFLTPLDKKDLAEAAKSQFAGAYSDHLALIKAYEGWKDAELDIGGCEYCWKNFLSAQSMKAIDALRREFRCLLKDIGLVDSNTANCNLWSCDVNLIRAVICYGLYPGICAVVHNEKSFSLKTMEDGQVLLYSNSVNARETRIPYPWLLFNEKIKVNSVFLRDSTAVPDAVVLLFGGNLLKGDADGHLKMLGGYLEFFMEPPVADLYQCVKRELDDLIQRKLLFPKMSIHLYDELLSAVRLLISIDTCEGKFVFGRRVFKPAKSTVMATSHPASISRTESGPGGDNSKSQLQTLLTRAGYAAPSYKTKQLKNNQFRATVEFNGMQIMGQPCSNKKSAEKDAAAEALQWLMGGKQSGSEYISHMSKLLKKSKKDHN 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03699 1200 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 570 744 IPR001650 -
Aip09g03699 1200 Gene3D - 746 852 - -
Aip09g03699 1200 SMART ha2_5 766 856 IPR007502 GO:0004386
Aip09g03699 1200 Gene3D - 1087 1179 - -
Aip09g03699 1200 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1111 1176 IPR014720 -
Aip09g03699 1200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 870 IPR027417 -
Aip09g03699 1200 CDD DEXHc_RHA-like 322 482 - -
Aip09g03699 1200 MobiDBLite consensus disorder prediction 239 255 - -
Aip09g03699 1200 Pfam Double-stranded RNA binding motif 1112 1174 IPR014720 -
Aip09g03699 1200 Gene3D - 569 723 IPR027417 -
Aip09g03699 1200 Pfam Helicase associated domain (HA2) 767 840 IPR007502 GO:0004386
Aip09g03699 1200 Pfam Helicase conserved C-terminal domain 571 703 IPR001650 -
Aip09g03699 1200 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 316 483 IPR014001 -
Aip09g03699 1200 SUPERFAMILY dsRNA-binding domain-like 1107 1184 - -
Aip09g03699 1200 MobiDBLite consensus disorder prediction 239 261 - -
Aip09g03699 1200 SMART DRBM_3 1112 1175 IPR014720 -
Aip09g03699 1200 MobiDBLite consensus disorder prediction 1095 1114 - -
Aip09g03699 1200 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 922 1003 IPR011709 -
Aip09g03699 1200 CDD SF2_C_RHA 487 712 - -
Aip09g03699 1200 Gene3D - 265 484 IPR027417 -
Aip09g03699 1200 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 96 1122 - -
Aip09g03699 1200 SMART helicmild6 598 704 IPR001650 -
Aip09g03699 1200 SMART ultradead3 304 497 IPR014001 -
Aip09g03699 1200 PANTHER ATP-DEPENDENT RNA HELICASE 96 1122 - -
Aip09g03699 1200 Pfam DEAD/DEAH box helicase 315 467 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03699 Aip-Chr9 143920953 143929672 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03699 09 143920953 143929672 Aip09g03699 09 143920953 143929672 ECH