Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03695 ATGGAAAAGGTTAAGATGGGTGTGGCTCGTGAATCACGGGGGTGGGTTGAAGGGGTGTGGGTCCTACAAGGTTCCCCGCGCCCATCCCGGGTGAGGCACGCACTACACTATGCATCGGATAACGTCCCTGGACCCCACCACTCCTTGTCCACGTCTTCCCTTCCACGCTGGAAAGTTCACTCTCTTTATGACACGTCACCTCCACCATTGGGGCAAACACCTACAACGACCGTACCACCAACACCCAAACCCAGCAACGCATGTCTCCTCTCTCCTTCATACAACGCATTACACGACCTCACACTCGTCACACTCTTCTCTTTTCTTAGTTCTTCTCCCAAACTCCCTAATTTCTCCTTACATAGTTGGATCAATTCAATTCCTTCCTTTAGAGAGGAAAAAAAAATTAGTTGCTGGTTTTATTGGGAAACAATCACGGGACGGAATGGATACCTTAACTTGACTTTGCCTTTGATGGAAAAGTGCTCATTTTCATGTTTGAAAACCAAAGGGAATGGAGAAGGTCTGCGAATTCTGCACGGATTTGAGGCCACTTGTTTATTGTACCATCTTGCTTATGTGCAGTGTTTGGATCACAAAATATTAATTTGTCAAGAGTGTGATCAGAAGCTGCACGATGTGTCTTTACCACATCGAAAACGAGCTATCAGAAGTTTCATGGGTTGCCCTTCTGCTAAAGACTTTGCGATGCTATGGTGTTTTGGCTTGAATGAGATGGAAAACATCACCTGTGAGGATTTGTTTGGATCTGCTTCATGTGTTTCCGCTGATTCAAATATGGCACAAACCTCTGTACGGGCTAGAAGTCGAATATCATCTAAGGCCAAACTTCATGGGGGATCGAGCAGTCGACAAGGTCAGATATTATACAGTGATCAAGAGCGAAAAAAGATTCTGCAGCAGATTATTGATTTAAAACAGCTTCAGCTAAATGAGAATACTGATCAAACTATAAAGATAAATGGACCTGAAGAAGAAACAGACTTAACTTCTTCAGCATATCAAACTATCAAGAAATCAGATGAAAAGTTCAATAAGCAAGAACAAAATTCAAAGGATGTTGTGGAAAAAGACAGTCACACAGTGGAGCTGAATCCTGAACCTTTGCCTTCTACGTTTTCTCAGCTTGATAACTTACCTTCAATTGTAGATCTTCCCTTACATGGAGAGTTATTCTGGACAGGGAAAAGTCCACCCCGAAGTAATCAGTTGTGGTCCCAAAACATACAAGACCTTGGGATATGTGAAGAACTTGTTTGTCGAGATGATTTCAACATACCTGACGTTGATCTAACATTCCAAAACTTTGAGGAACTATTTGGAGATCAAGATCCAGTTAGAGCACTGCTTGATGATAATGATGTTTCCTGCTCCTCTTTAGAGAAGGATATGTCAATTGATAAGTCAGATATTGACAATCTAAGTGCAATAGAGGATTCTTCGGCAGCCATATCGATTACCATCTTGCAATCAGCTCATGAGAACAAGGATATCGATAGTACCAACATCCAGCATTATCCAAGAAGCACAGATCCTCCACACACAATTCGACCATTCGAGTCAACTGTGTCATCGTCTGTTTCAAGATTCTGGGCTGCAAGCAATCCTACTTATCACAATGACGGTGCCCTTTCTCCCTGCAGTGAAGAGAAAGGCTATTTAGGAAATTCAGCTGAATTGGAGATATCACATATGGAGGCCACACAAAATCTCACTCTCACGTATGAAGAGAAGCCATCTCGACGGAACGAGAAGCAAGTTCGACTCCCATCTGGGAAACCTGGAGCTAATGGTCCGAAAGAGCATTCTGTTAGGAAGTGTGTCGGAGACGGTTTTTTTCCCTCGCACCAAACACACTACCCCTCTCTCACTCATCGCCACTATATAAACCCTTCTTCCACCTTTCTCTCTCTCTCAAGAAGCTCAGAACCAGACGACGACGTCAGCATAATCTTGCATCGAGGAGAGAAAAAAAAAATGCATAACAAGGAAGCTTGCTCTCCCTCCTCCAATGGCGGATTTGGCGCCAACACCGCCACAGGCTGTACTCAAATTCAGTCCAATGGCGGTGCATTGGCTTCGTTCTACTCTGCTCTCTTGAACGACAATCCGTCGCTCTCGGCGAATAGCAGCAGCTCGCTTTACCCGTACTCTGAGTCGGGAACTCAGATCAACTCGTACGACTCTTGCGTCATACAGAAGCACCAGGACATGGTGAATCGTCACAGCATGTGCCTCAATCGCCTCGTGGAGACTTCCAAGGAGGTAGAATCTCTGCGACAAGAGAACGCACATCTCCGTGCGGTGAACAAGGAGCTCCAGAAGCAGCTCAACTTCGTCATCCAGGCTTCGCTGGAGAACCAATTCGGTGGCGGCTCCTCCTGCCAGGGTCAAACGACGCCGTTCGACGTGGTGCATGGATTCCGCGGGTTTCAGATTGGGGAAGGAAAAGAGAATTGCGGTGATTGGAATAGTAACAACACCAACAATAATAGCAATAACAATAAGGAGCAGGAAGTTTCGGACGAGAGTCCAACGAGCGTGATTGAGAACAACGGCGTTGAGGTTGAGAGGTTCTCTCTCCCAAAGAGCATATCTGTGAGGTCCAATGGTTACCTGAAGATGGCTCAGTCTGCTGCTGCAGCTACTGCCACCAACACCACTACCTGTCGCACTAAGCCTACTACTCGCCCACGCGTCTCCTCCACTCCACCTGATGCCGTTCAAAAGGTATATGTGCGTGGAGGGAAGACAGAGGAAGAGCCTCTTGAGATGGTGGTTTATAACCAAGGGATGTTCAAGACTGAGCTGTGCAATAAATGGCAGGAAACAGGGACGTGCCCATATGGAGACCACTGCCAATTTGCTCATGGCATAGGGGAGCTTCGCCCAGTGATCCGCCACCCCCGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGTGTTGTATGTCCATATGGCCATAGATGCCATTTCCGCCACGCACTCACTGAACAAGAGAAAGCTATATCACATCCTAAGTCCAGAACAATCAAGCTCGAAAGATAG 3072 0.4632 MEKVKMGVARESRGWVEGVWVLQGSPRPSRVRHALHYASDNVPGPHHSLSTSSLPRWKVHSLYDTSPPPLGQTPTTTVPPTPKPSNACLLSPSYNALHDLTLVTLFSFLSSSPKLPNFSLHSWINSIPSFREEKKISCWFYWETITGRNGYLNLTLPLMEKCSFSCLKTKGNGEGLRILHGFEATCLLYHLAYVQCLDHKILICQECDQKLHDVSLPHRKRAIRSFMGCPSAKDFAMLWCFGLNEMENITCEDLFGSASCVSADSNMAQTSVRARSRISSKAKLHGGSSSRQGQILYSDQERKKILQQIIDLKQLQLNENTDQTIKINGPEEETDLTSSAYQTIKKSDEKFNKQEQNSKDVVEKDSHTVELNPEPLPSTFSQLDNLPSIVDLPLHGELFWTGKSPPRSNQLWSQNIQDLGICEELVCRDDFNIPDVDLTFQNFEELFGDQDPVRALLDDNDVSCSSLEKDMSIDKSDIDNLSAIEDSSAAISITILQSAHENKDIDSTNIQHYPRSTDPPHTIRPFESTVSSSVSRFWAASNPTYHNDGALSPCSEEKGYLGNSAELEISHMEATQNLTLTYEEKPSRRNEKQVRLPSGKPGANGPKEHSVRKCVGDGFFPSHQTHYPSLTHRHYINPSSTFLSLSRSSEPDDDVSIILHRGEKKKMHNKEACSPSSNGGFGANTATGCTQIQSNGGALASFYSALLNDNPSLSANSSSSLYPYSESGTQINSYDSCVIQKHQDMVNRHSMCLNRLVETSKEVESLRQENAHLRAVNKELQKQLNFVIQASLENQFGGGSSCQGQTTPFDVVHGFRGFQIGEGKENCGDWNSNNTNNNSNNNKEQEVSDESPTSVIENNGVEVERFSLPKSISVRSNGYLKMAQSAAAATATNTTTCRTKPTTRPRVSSTPPDAVQKVYVRGGKTEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAISHPKSRTIKLER 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03695 1023 MobiDBLite consensus disorder prediction 826 853 - -
Aip09g03695 1023 MobiDBLite consensus disorder prediction 348 368 - -
Aip09g03695 1023 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 189 562 - -
Aip09g03695 1023 Coils Coil 756 783 - -
Aip09g03695 1023 ProSiteProfiles Zinc finger C3H1-type profile. 977 1005 IPR000571 GO:0046872
Aip09g03695 1023 MobiDBLite consensus disorder prediction 584 610 - -
Aip09g03695 1023 SUPERFAMILY CCCH zinc finger 973 1007 IPR036855 GO:0046872
Aip09g03695 1023 MobiDBLite consensus disorder prediction 892 911 - -
Aip09g03695 1023 SUPERFAMILY CCCH zinc finger 936 971 IPR036855 GO:0046872
Aip09g03695 1023 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 189 562 - -
Aip09g03695 1023 SMART c3hfinal6 977 1004 IPR000571 GO:0046872
Aip09g03695 1023 SMART c3hfinal6 939 966 IPR000571 GO:0046872
Aip09g03695 1023 Gene3D - 934 972 - -
Aip09g03695 1023 Gene3D - 973 1009 - -
Aip09g03695 1023 ProSiteProfiles Zinc finger C3H1-type profile. 939 967 IPR000571 GO:0046872
Aip09g03695 1023 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 940 965 IPR000571 GO:0046872
Aip09g03695 1023 MobiDBLite consensus disorder prediction 892 910 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03695 738 1021 C3H Transcription Factor Family AT1G68200 51.027 3.91e-78 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip09g03695 zf-CCCH 1e-11 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03695 09 143831748 143844072 Aip09g03695 09 143831748 143844072 ECH