Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03688 ATGGATTCAAACACATCAAGCTTTCTTTTGAACTCCTCAACTTTTCACTCAGTTTTCTACCAAGACAAACAGAGTGATGACATCATTGATCTTGGTCTTAGCCTCAAAACTGTTCAACATGAGGCTTCTCATTCTTCTGCCAACTTGTATGATGATGATATTATGGATTGGCCTCACTCTAATCTCAACCTGAAGAACTCAAGCAAGAACTTTGATGAAGAGATAGAGGGGGTCCAGAGCAATGAGAGATGGGCCTATGTGAAGGTGAATATGGATAGGGTTACAATTGGTAGGAAAATTTGCATACTTGATCATGGAGGATACTCAAGTCTAGCTATCCAATTAGAAGACATGTTTGGAAGCCAAAGCCTCTCAGGTCTAAGATTGTTCCAACCTGATTCAGAGTACTCATTATTCTACAAAGACAGAGAAGATAATTGGAGGAGTGTAGGTGATGTGCCATGGAAAGAGTTTGTAGAATGTGTGAAGAGATTAAGGATTGCAAAAAGGAATGCAGGCCTTGCTTCCTGTTCATCTGGATACATCTAA 549 0.3989 MDSNTSSFLLNSSTFHSVFYQDKQSDDIIDLGLSLKTVQHEASHSSANLYDDDIMDWPHSNLNLKNSSKNFDEEIEGVQSNERWAYVKVNMDRVTIGRKICILDHGGYSSLAIQLEDMFGSQSLSGLRLFQPDSEYSLFYKDREDNWRSVGDVPWKEFVECVKRLRIAKRNAGLASCSSGYI 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03688 182 Gene3D - 78 179 - -
Aip09g03688 182 SUPERFAMILY CAD & PB1 domains 84 169 - -
Aip09g03688 182 Pfam AUX/IAA family 61 170 IPR033389 -
Aip09g03688 182 PANTHER AUXIN-RESPONSIVE PROTEIN IAA34 1 172 - -
Aip09g03688 182 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 172 IPR003311 GO:0005634|GO:0006355
Aip09g03688 182 ProSiteProfiles PB1 domain profile. 84 172 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03688 Aip-Chr9 143734797 143735980 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03688 79 167 B3 DNA Binding Superfamily AT1G19220 36.667 1.89e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Aip09g03688 AUX_IAA 3.1e-21 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03688 09 143734797 143735980 Aip09g03688 09 143734797 143735980 ECH