Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03667 ATGTACCGTTGTGTTATCGTTAGCATCATCCTCTACTCTGTGTTGAGCAGAACCACTTTGAGCAGTTATGTGGATCCACACTACCTGGCATGTGAACCCCAAACATGCGGCAACCAATCCATAAGATACCCCTTCTACATCCAAGGCAAACAGCAACCTTTCTGTGGCTACCCTGGTTTTGCCATCTCTTGTGATAGTAATGGCTTTCTGATTCTCAGTCTCTCTAATACTCCTTACATCATCCATCAAATATTCTACCACAACCAATCACTCAGAGTTTCCAATGCTGCCTTTTCATCAGCCAACAACACTAACACGCCAGATTCTTGTATTTCTGCTGCACACAACCTCACCCTTCCTCCAACCAGTACCTTCAATCTTGTTCATCAGAATAATCATAAGGACATCGTGTTGTTCTTCGGCTGTAACCTGTCATCCATGCCCCTAGAGTTGTTAGATTACAGAATTGGGTGTTCTGAAGCGACCAACAAAACGGATGGTTCGGTTCTGGCATTGTATAAGGACGATGTAAAAACAGTAAGCTTGGTGTCCAAGAGTTGCGGGACTGGCGGAGAGGTGGTGGACGCGGTCGTGGAAGAGAGTGAAGGAGTTGGGATAGAAGAGAAGCTGAGGAGAGGGTTCATGCTGAATTGGACAGCGAGTGATTGCAAGTTGTGCAATAGCACAGGAGGAAGGTGTGGCTTCAATTCAACTATATTCACTTTCCAGTGTTACTGCACTGATCGAATTCATGCTTCCAAATGTGTTATTTCAGATGGTAGAAGCAAGGCTTCCATGATGATGGGACTTGCACTCGGACTAGCTGCTGCGGTTACTCTGCTGTTAGTAATGGTCACCCTCTACTACACAAGATGGAAGAAGCAAAACTCAAAACACCTTCTGGTTGATGCCTTTTTGGAGAGGCATGGACACCTTCAAATCAAGAGGTACAGCTATTCCGACATGAAGAAAGTGACCAACTCCTTCAAAAACAAACTAGGTGAAGGGGGATTTGGCAGTGTATACAAAGGACAATTAAAGGATGGACGACATGTTGCAGTGAAGATCCTAAGTGAATTGAAAGGTGATGGTGAAGATTTCATCAATGAAGTTGTGAGCATGAGCAGAACTTCTCATGTTAACATTGTTGCTCTTCTTGGCTTCTGCTTTCAAGGTTCTAAACAAGGACTAGTTTATGAATTTATGCCTAATGGGTCCCTTGAGAAGCTACTCTCTGATGAAAATGACGTGATAGGGGATCGCCAATTAGATTATCAAACTTTATATGATATTGCAATTGGTGTTGCTAAAGGACTAGAGTATCTGCATAAGGGCTGCAATACTAGAATTCTGCATTTTGATATAAAGCCTCATAACATTCTCTTGGATGAGAATTTTTGTCCCAAAATTTCAGACTTTGGACTTGCGAAAGTTTGTACAAGAAAAGAAAGCATGGTATCGATATCTGGTACAAGAGGAACTGCAGGTTATATTGCCCCAGAGGTATTTTCTAGGAATTTCGGTGTAATATCACATAAGTCGGATGTTTATAGTTATGGAATGATGGTTTTAGAGATGGTTGGGAGAAGAAGGAATATCAAGACTGAAGTAGATGCTTCAAGTGAAACGTATTTTCCTTATTGGATATACAATAGACTTGTGTCAAATCAAGAGCTTGGTCTGCAGAGTATAAGCAATGAATTTGATAACGAGAAGGTAAGAAAGCTGACAATAGTGAGCTTATGGTGCATTCAAACTAACCCTTCAAATCGGCCATCAATAAGTAAGGTGGTGGAAATGCTAGAAGGAAGAGTTGAATTGTTACAATTGCCACCTAAACCATTTTGGTTTTCTCCCTCGGCCTCTCCCTAA 1872 0.4188 MYRCVIVSIILYSVLSRTTLSSYVDPHYLACEPQTCGNQSIRYPFYIQGKQQPFCGYPGFAISCDSNGFLILSLSNTPYIIHQIFYHNQSLRVSNAAFSSANNTNTPDSCISAAHNLTLPPTSTFNLVHQNNHKDIVLFFGCNLSSMPLELLDYRIGCSEATNKTDGSVLALYKDDVKTVSLVSKSCGTGGEVVDAVVEESEGVGIEEKLRRGFMLNWTASDCKLCNSTGGRCGFNSTIFTFQCYCTDRIHASKCVISDGRSKASMMMGLALGLAAAVTLLLVMVTLYYTRWKKQNSKHLLVDAFLERHGHLQIKRYSYSDMKKVTNSFKNKLGEGGFGSVYKGQLKDGRHVAVKILSELKGDGEDFINEVVSMSRTSHVNIVALLGFCFQGSKQGLVYEFMPNGSLEKLLSDENDVIGDRQLDYQTLYDIAIGVAKGLEYLHKGCNTRILHFDIKPHNILLDENFCPKISDFGLAKVCTRKESMVSISGTRGTAGYIAPEVFSRNFGVISHKSDVYSYGMMVLEMVGRRRNIKTEVDASSETYFPYWIYNRLVSNQELGLQSISNEFDNEKVRKLTIVSLWCIQTNPSNRPSISKVVEMLEGRVELLQLPPKPFWFSPSASP 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03667 623 Pfam Protein kinase domain 330 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g03667 623 Gene3D Phosphorylase Kinase; domain 1 304 401 - -
Aip09g03667 623 Pfam Wall-associated receptor kinase C-terminal 183 248 IPR032872 -
Aip09g03667 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Aip09g03667 623 ProSiteProfiles Protein kinase domain profile. 327 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g03667 623 Pfam Wall-associated receptor kinase galacturonan-binding 31 94 IPR025287 GO:0030247
Aip09g03667 623 SUPERFAMILY Protein kinase-like (PK-like) 311 602 IPR011009 -
Aip09g03667 623 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 31 623 - -
Aip09g03667 623 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Aip09g03667 623 SMART serkin_6 327 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g03667 623 Gene3D Transferase(Phosphotransferase) domain 1 402 613 - -
Aip09g03667 623 PANTHER RUST RESISTANCE KINASE LR10-RELATED 31 623 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03667 Aip-Chr9 143510232 143512469 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03667 24 614 Receptor kinase-like Gene Family AT5G38260 39.769 9.32e-141 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Aip09g03667 Pkinase 3.6e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03667 09 143510232 143512469 Aip09g03667 09 143510232 143512469 ECH