Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03664 ATGGCGGCAACAAGTCACCTCGTTGCTCACGCTGCCTTGTTCCTCTCTCTGGTTTTTCACATGCATCTTCTGGTTAGCGGCTCTACCAGCCAAGATAAAGAGGCTCTTTTGGCCTTCAAAGCTGGTTCAGACGCGTCGGAGAAGTTAACGAGTTGGAACAACAGCACCAACCTGTGCAGCTGGGACGGTGTCTCCTGCATCAACAACCGAGTCACGCGACTCGTTCTGGAGAACCTCGACCTCCAAGGTTCCATTCAACCATTAACTTCACTCACTCAACTGCGAGTTCTCAGCCTCAAGCGAAACCGTTTCTCTGGAACCCTTCCTTCTCTCTCTAACTTCACCGCCCTCAAGCTTCTCTTCCTCTCTTACAACCACTTCTCCGGTGACTTTCCAGCCACAGTGACCTCTCTCTTCCGCCTCTATCGTCTCGATCTGTCCCACAATAACCTCTCCGGCGAGATTCCGGCGACAGTCAACCACTTAGCCCACCTTCTCACTCTCCGTCTCGAGGAGAACCGTTTCTCTGGCTACATTCCTGGCGTCAACCTCCCAAACCTGCAAGACTTCAACGTCTCCGGGAACCTCCTCTCCGGCGAGATACCGAAGTCGCTCTCGGCTTTCCCCGTATCCTCGTTCGGGCAAAACCCTTCTCTATGCGGAGCCCCGATTCAGAACTGCACCGGAGTGGTGCCTGACCCTACAAAACCCGGATCCGAGGGCGCCATTGCGTCCCCAGTGGTGCCACGTGGCGGCGCCACAACAACAGTGTCATCTTCCCCGAGTTCAATGCCAGCAAACGACGGTGGAGCAGCTCCAAAAACATCGAAAACACATAGAAACGGAGGTTCGAAGATAAGCCCGGTGGCTCTAATAGCCATAATTGTGGGCGATGTATTGGTACTGGGCATTGTGTCATTGCTTCTATATTGCTACTTCTGGAGGAACTACTCGGCGAAGTTGAAGGAAGGGAAAGGGTCAAAGCTTTTCGAGAGCGAGAAGATTGTGTATTCTTCGAGTCCGTACCCTGCACAAGGAGGAGGAGGAGGGTTTGAGAGGGGGAAAATGGTGTTCTTCGAAGGCGAGAAGAGGTTCGAATTGGAGGACTTGCTTCGAGCGTCTGCTGAGATGCTGGGAAAAGGTGGGTTCGGAACGGCGTACAAAGCGGTTCTTGATGATGGGAACGTTGTTGCGGTGAAGAGGCTGAAAGATGCGCAGATTGGAGGGAAGAGAGAGTTCGAGCAGCACATGGAGCTTCTTGGAAGGTTGAGGCATCAGAATATCGTGAGCTTGAGGGCTTACTATTTTGCCAGAGATGAGAAGTTGTTGGTCTACGATTACATGCCCAATGGAAGCTTGTTCTGGCTCCTTCATGGGAACCGAGGACCGGGGAGAACCCCACTGGACTGGACCACTCGGCTCAAGATAGCAGCTGGAGCGGCGCGTGGCGTGGCCTTCATTCACAACTCGTGTAAGTCCCTCAGGCTCAACCACGGAAACATCAAATCCACCAACATTCTCTTAGACAAGCAGGGAAACGCCCGGGTATCAGATTTTGGGCTCTCCGTGTTCGCGGGCCCAGGCCCATCAACATCTGGTGTCAGATCCAACGGCTATCGTGCTCCCGAGGTGTCATCTGACGGTCGAAAACAGTCCCAAAAGTCTGACGTGTACTCGTTCGGTGTATTCTTGCTTGAGTTGCTGACGGGGAAGTGCCCCTCGGCGGTGGAGGGTGCTGGTGCGCCCGCGGTGGACCTGCCAAGGTGGGTCCAGTCCGTTGTGAGGGAGGAATGGACCGCTGAGGTATTTGATTTGGAGCTGATGAGGTACAAGGACATTGAAGAGGAGATGGTTGGGCTGTTGCAGGTTGCTATGGCGTGCACTGCCCCTGCACCTGATCAACGGCCTAGCATGAGCCACGTGGTCAAGATGATCGAGGAGTTGCGTGGGGTCCAGGTGTCACCGTGTCATGACACGTTGGACTCTGTGTCTGAGTCACCTTCCGTCTCCGAAGATGCATGTGGAGCTAGTCAGTGA 2037 0.5415 MAATSHLVAHAALFLSLVFHMHLLVSGSTSQDKEALLAFKAGSDASEKLTSWNNSTNLCSWDGVSCINNRVTRLVLENLDLQGSIQPLTSLTQLRVLSLKRNRFSGTLPSLSNFTALKLLFLSYNHFSGDFPATVTSLFRLYRLDLSHNNLSGEIPATVNHLAHLLTLRLEENRFSGYIPGVNLPNLQDFNVSGNLLSGEIPKSLSAFPVSSFGQNPSLCGAPIQNCTGVVPDPTKPGSEGAIASPVVPRGGATTTVSSSPSSMPANDGGAAPKTSKTHRNGGSKISPVALIAIIVGDVLVLGIVSLLLYCYFWRNYSAKLKEGKGSKLFESEKIVYSSSPYPAQGGGGGFERGKMVFFEGEKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQIGGKREFEQHMELLGRLRHQNIVSLRAYYFARDEKLLVYDYMPNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGVAFIHNSCKSLRLNHGNIKSTNILLDKQGNARVSDFGLSVFAGPGPSTSGVRSNGYRAPEVSSDGRKQSQKSDVYSFGVFLLELLTGKCPSAVEGAGAPAVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQVAMACTAPAPDQRPSMSHVVKMIEELRGVQVSPCHDTLDSVSESPSVSEDACGASQ 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03664 678 MobiDBLite consensus disorder prediction 236 281 - -
Aip09g03664 678 PANTHER - 28 664 - -
Aip09g03664 678 Pfam Protein kinase domain 376 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g03664 678 MobiDBLite consensus disorder prediction 529 550 - -
Aip09g03664 678 Gene3D Transferase(Phosphotransferase) domain 1 448 663 - -
Aip09g03664 678 SUPERFAMILY Protein kinase-like (PK-like) 376 645 IPR011009 -
Aip09g03664 678 MobiDBLite consensus disorder prediction 659 678 - -
Aip09g03664 678 Gene3D Ribonuclease Inhibitor 25 89 IPR032675 -
Aip09g03664 678 Gene3D Ribonuclease Inhibitor 90 231 IPR032675 -
Aip09g03664 678 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Aip09g03664 678 Gene3D Phosphorylase Kinase; domain 1 352 447 - -
Aip09g03664 678 MobiDBLite consensus disorder prediction 251 266 - -
Aip09g03664 678 ProSitePatterns Protein kinases ATP-binding region signature. 378 400 IPR017441 GO:0005524
Aip09g03664 678 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 28 664 - -
Aip09g03664 678 CDD STKc_IRAK 378 648 - -
Aip09g03664 678 ProSiteProfiles Protein kinase domain profile. 372 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g03664 678 SUPERFAMILY L domain-like 50 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03664 Aip-Chr9 143486422 143489261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03664 32 677 Receptor kinase-like Gene Family AT1G68400 67.123 0.0 831
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Aip09g03664 Pkinase 9.7e-39 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03664 09 143486422 143489261 Aip09g03664 09 143486422 143489261 ECH