Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03636 ATGAGTCCGTCGAGTAAGAACGTGGCAAACGCCGTCGGTGGCAAAACGGCAAGAGCGTGCGATAGCTGCATAACGAAGCGAGCACGGTGGTACTGTGCTGCCGATGATGCTTTCCTCTGCCAAGCATGTGACTCTTCTGTTCACTCCGCTAACCCACTCGCTCGCAGGCATCAGAGGCTGCGCTTGAAAACCGCAACTTTGGACCCTCTCAACACTACCTCTACCTGTGCTCCTACGTGGCACCATGGCTTCACAAAGAAAGCTCGCACGCCCCGAAACGGTGGTAAGACCAATCATTCGTCTTCTTCAACTCGTCCAACATCCAAGTCTTGTTGGAGCAGCCGCAACAACAACCAGCAGCCTTTTCATCTGGTGCCGGAAGAGGGCGAGGGCTCCGATGAAGTGAATTCCCATGAAGACAACGAGGAGCAGCTTCTTTATAGGGTTCCTGTATTCGATCCCTTTGTAGCCGAGCTATGCAGTCCTGCTGAGAATAATAACAAGAAGGAGAGCGAAGAGAGCAAGGGCTCCTTTGGTTCTCACTTGCATGGCTTTCTTCCATCGGAAGCTGATCTTGCTGAGTTTGCGGCTGATGTGGAGAGCTTGCTGGGTAGGGGAATGGAGAACGAGTGCGTTGGGATGGAACACCTTGGTCTTATTGATAACAATAATAATAATAATAAGGTAGTGAAGGTGGAAATGGAACAGGAACAGGAACACATGGATGCTACCTGTAGTAGTTGCAAGCTCGAGGAGGGAGATAATCACATGATGATGATGGAGATTGGAAGAGAAACGGCGTTTCAGTTTAGCTTTGACTACGACGAATCTCATGAAACTGAAGAGATAGATAAGGAGAAGGTCAAAGAGAAAGAAGACGATGATGACGACGATGAAGATGCAATTAATAAGAAGAGGAAGATATTGCTGCAGCTAGATTACGAGGGAGTAATCAATGCGTGGGGTGGTAGTCATAAATCTCCATGGACTACAGGTCACAAACCAAACTTGGACCTCCATGATTGCTGGCCTCATACCATGGCAACAGGGGGAACAGAGCTTCATCATGGTTATGGTGAATTGATGATTGGATTGGGGTGTAACCCATCATCGGTAATATTGGGAGACGGGGGTAGAGAGGCAAGAGTGTCAAGGTACAGAGAGAAGCGCCGAACAAGGTTGTTCTCCAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGGCCCAGAATGAAAGGTAGATTCGTCAAGAGGGCTTCATTTGCCGCACCATTTCCGTTGATTGCTTAA 1299 0.4827 MSPSSKNVANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHQRLRLKTATLDPLNTTSTCAPTWHHGFTKKARTPRNGGKTNHSSSSTRPTSKSCWSSRNNNQQPFHLVPEEGEGSDEVNSHEDNEEQLLYRVPVFDPFVAELCSPAENNNKKESEESKGSFGSHLHGFLPSEADLAEFAADVESLLGRGMENECVGMEHLGLIDNNNNNNKVVKVEMEQEQEHMDATCSSCKLEEGDNHMMMMEIGRETAFQFSFDYDESHETEEIDKEKVKEKEDDDDDDEDAINKKRKILLQLDYEGVINAWGGSHKSPWTTGHKPNLDLHDCWPHTMATGGTELHHGYGELMIGLGCNPSSVILGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAAPFPLIA 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03636 432 MobiDBLite consensus disorder prediction 127 141 - -
Aip09g03636 432 ProSiteProfiles CCT domain profile. 379 421 IPR010402 GO:0005515
Aip09g03636 432 MobiDBLite consensus disorder prediction 78 141 - -
Aip09g03636 432 Pfam B-box zinc finger 17 59 IPR000315 GO:0008270
Aip09g03636 432 Pfam CCT motif 379 421 IPR010402 GO:0005515
Aip09g03636 432 MobiDBLite consensus disorder prediction 279 300 - -
Aip09g03636 432 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Aip09g03636 432 CDD Bbox1_BBX-like 19 62 - -
Aip09g03636 432 SMART bboxneu5 15 62 IPR000315 GO:0008270
Aip09g03636 432 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 5 426 - -
Aip09g03636 432 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 5 426 - -
Aip09g03636 432 MobiDBLite consensus disorder prediction 94 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03636 Aip-Chr9 143176669 143178378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03636 6 421 C2C2-CO-like Transcription Factor Family AT1G25440 46.966 4.38e-108 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Aip09g03636 CCT 1.4e-17 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03636 09 143176669 143178378 Aip09g03636 09 143176669 143178378 ECH