Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03630 ATGGCGGAGCCTCGGAAACAACATAGAACAAAGCAAAGAACTCACGAGTCCTCCAAGATGACCAGAAAACTCCGCATAATCTACGCGGATCCTGAATTAACCGATTCATCCGACGATGATTCAGAGATGAACCAAAAGAGAATCAAGAGGAGCATCCATGTGATCCCTCTCCCCCTTCCCTCCGGCCTCTCCACTCCCACCTCCTCCTCCGAAGTTGTTGCAAAACTTAAACAACCCATCTTCAAGAGGAGGGTTTCGCCGGCAACCGGTACCAAGAGGCAAACCTCCGGCAAGTACAGAGGAGTTAGGCAGAGGAAGTGGGGAAAATGGGCCGCTGAGATTCGCGACCCTTTCAAGAGCGCACGCATCTGGTTGGGTACTTACAACACTGCCGAGGAAGCTTCACAGGCCTACGAGGCTAAAAGGCTCGAGTTTGAAGCCATGGCGAGGTCCATGTCTCAGTCACAGTCTCAGAACTCCGATGACAAGAGCAACTGCTGCAACTCATCTCCTGCTCCCGCCGGAGTTTGTGTTTCCGACAACAAGTCCTCTACATCGGAGGGCTCCGATAGCGTTTTCTCTTGCACTTCTCCGTCCTCTGTTCTTGAGTTGGATTCTTCAGCTTCTCATTCCAACGACAGTGCTAATGCTAATGCCAATGCTAATGAAGCTGTTGAGACTAATGATTTGGAGACTGGTGATTTGGTGGCTGAATTGGCTGCCTTGGAGATACCGGATTTGAGCATGCTGAACCTCCCTCCTCCGTCACCACCACCACCACAGTCTTCTGTCTCTGTGTCTACCGCCGCTGCTTCTGTGCCTGAGATCGGCCTTGGACTCGATTTTGACTGGATAAATTTTGATGATTATGGACATGGATTTGATGATCTTGGTGGGTTCGAGGATTTGCAAATCTGCGGCTTGGATGATAATGGGCCTAGCCAACTTCCCGATTTCGATTTTGATGATTTTGGTGCTGATGAGTTTGCTGGTTGGATTGAGGAACCCCTCAATATACCCTGCGCGTAA 1029 0.5024 MAEPRKQHRTKQRTHESSKMTRKLRIIYADPELTDSSDDDSEMNQKRIKRSIHVIPLPLPSGLSTPTSSSEVVAKLKQPIFKRRVSPATGTKRQTSGKYRGVRQRKWGKWAAEIRDPFKSARIWLGTYNTAEEASQAYEAKRLEFEAMARSMSQSQSQNSDDKSNCCNSSPAPAGVCVSDNKSSTSEGSDSVFSCTSPSSVLELDSSASHSNDSANANANANEAVETNDLETGDLVAELAALEIPDLSMLNLPPPSPPPPQSSVSVSTAAASVPEIGLGLDFDWINFDDYGHGFDDLGGFEDLQICGLDDNGPSQLPDFDFDDFGADEFAGWIEEPLNIPCA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03630 342 Pfam AP2 domain 98 147 IPR001471 GO:0003700|GO:0006355
Aip09g03630 342 PIRSF PTI6 4 231 IPR017392 GO:0003700
Aip09g03630 342 PIRSF PTI6 259 332 IPR017392 GO:0003700
Aip09g03630 342 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 5 342 - -
Aip09g03630 342 Gene3D AP2/ERF domain 97 152 IPR036955 GO:0003700|GO:0006355
Aip09g03630 342 MobiDBLite consensus disorder prediction 1 45 - -
Aip09g03630 342 CDD AP2 98 145 IPR001471 GO:0003700|GO:0006355
Aip09g03630 342 SMART rav1_2 98 160 IPR001471 GO:0003700|GO:0006355
Aip09g03630 342 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700|GO:0006355
Aip09g03630 342 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700|GO:0006355
Aip09g03630 342 MobiDBLite consensus disorder prediction 83 102 - -
Aip09g03630 342 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 342 - -
Aip09g03630 342 ProSiteProfiles AP2/ERF domain profile. 98 155 IPR001471 GO:0003700|GO:0006355
Aip09g03630 342 MobiDBLite consensus disorder prediction 149 192 - -
Aip09g03630 342 SUPERFAMILY DNA-binding domain 98 145 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03630 Aip-Chr9 143098449 143099477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03630 5 341 AP2-EREBP Transcription Factor Family AT1G68550 33.994 2.14e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip09g03630 AP2 1.7e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03630 09 143098449 143099477 Aip09g03630 09 143098449 143099477 ECH