Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03624 ATGAAGGTTTTTGTAAAGACTCTGAAGGGCACGCACTTCGAGATTGAAGTGAAGCCCGATGACACGGTTACCGAAGTGAAGAAAAATATAGAAACTGTTCAAGGTGCAAATGTCTACCCTGCTGCACAGCAAATGCTTATTCATCAAGGCAAGGTTCTTAAGGATGGTACTACTTTGGAGGAAAACAAAGTAGCTGAAAATAGTTTCATTGTAATCATGCTTTCTAAGAGTAAGAGCACATCTGGTGAAGGATCTACTGCATCAACAGCACCTTCATCAAAGGCTCCACAGACTAGTGCAACTCCTACTCCTACCCCATCTGTGTCAGTAGCACCTCAAGCTGTTCCTGCCACTGCTGCACCGCCTGCACCTTCACCTTCACCTGCACCTTCGCCTTCACCTGCACCTGCTGCACCTGCACCTGCACCTGCACCTGCACCTTCACCTGCTGCAGCTCCTACATCTACAGATACTGCTGTGGTAGGGTCTGATATCTATGGGCAGGCAGCATCCAATCTGGTTGCCGGAAGCAACTTGGAGGGAACAATTCAGCAAATTCTTGATATGGGGGGTGGGAGCTGGGATAGGGACACAGTTATCCGTGCTCTTAGAGCTGCTTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATACGGGTATCCCTGAGCAAGCTGAAGCTCCACCTGTGGCCCGAGTGCCTACAAGTGTACAACCTACAAATCCACCAGCTGCTGCACCTCAGGCAGCTTCACCTCAAGCAGCACAACCAGCTCCTGTCACAACTAGTGGACCAAATGCTAATCCTCTAGACCTATTTCCCCAGGGCCTCCCCAATGTTGGTTCTGGTGCTGCTGGCGCTGGCTCTTTAGAATTTCTGCGCAACAGCCAACAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCTAACCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGAGATCATCAAGCTGATTTCCTTCGACTGATAAATGAACCTGTGGAGGGTGGTGAGGGGAATTTATTTGGCCAGCTAGCTGCTGGCATGCCACAATCAGTAACTGTTACACCTGAAGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGCTTTGATCGTGCACTTGTGTTGGAGGTGTATTTTGCTTGCAACAAGAACGAGGAATTGGCTGCCAACTACCTCTTAGATCACATGCACGAGTTTGACGAACAATAG 1251 0.486 MKVFVKTLKGTHFEIEVKPDDTVTEVKKNIETVQGANVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKSKSTSGEGSTASTAPSSKAPQTSATPTPTPSVSVAPQAVPATAAPPAPSPSPAPSPSPAPAAPAPAPAPAPSPAAAPTSTDTAVVGSDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVIRALRAAYNNPERAVEYLYTGIPEQAEAPPVARVPTSVQPTNPPAAAPQAASPQAAQPAPVTTSGPNANPLDLFPQGLPNVGSGAAGAGSLEFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNLFGQLAAGMPQSVTVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFDEQ 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03624 416 SUPERFAMILY XPC-binding domain 287 352 IPR036353 GO:0003684|GO:0006289|GO:0043161
Aip09g03624 416 Gene3D - 1 80 - -
Aip09g03624 416 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 415 - -
Aip09g03624 416 Gene3D - 172 222 - -
Aip09g03624 416 PRINTS DNA repair protein Rad23 signature 316 338 IPR004806 GO:0006289
Aip09g03624 416 PRINTS DNA repair protein Rad23 signature 365 381 IPR004806 GO:0006289
Aip09g03624 416 PRINTS DNA repair protein Rad23 signature 382 396 IPR004806 GO:0006289
Aip09g03624 416 PRINTS DNA repair protein Rad23 signature 397 412 IPR004806 GO:0006289
Aip09g03624 416 Pfam UBA/TS-N domain 371 406 IPR015940 -
Aip09g03624 416 Pfam UBA/TS-N domain 182 217 IPR015940 -
Aip09g03624 416 CDD UBA1_Rad23_plant 173 222 - -
Aip09g03624 416 CDD UBA2_RAD23_plant 367 409 - -
Aip09g03624 416 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 415 - -
Aip09g03624 416 MobiDBLite consensus disorder prediction 117 150 - -
Aip09g03624 416 SUPERFAMILY UBA-like 350 414 IPR009060 GO:0005515
Aip09g03624 416 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 177 220 IPR015940 -
Aip09g03624 416 TIGRFAM rad23: UV excision repair protein Rad23 1 414 IPR004806 GO:0006289
Aip09g03624 416 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 368 409 IPR015940 -
Aip09g03624 416 SMART CBM 288 331 IPR006636 -
Aip09g03624 416 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Aip09g03624 416 Gene3D - 281 346 IPR036353 GO:0003684|GO:0006289|GO:0043161
Aip09g03624 416 SUPERFAMILY UBA-like 176 228 IPR009060 GO:0005515
Aip09g03624 416 Gene3D - 363 410 - -
Aip09g03624 416 SMART ubq_7 1 75 IPR000626 GO:0005515
Aip09g03624 416 MobiDBLite consensus disorder prediction 231 267 - -
Aip09g03624 416 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Aip09g03624 416 SMART uba_6 179 219 IPR015940 -
Aip09g03624 416 SMART uba_6 371 408 IPR015940 -
Aip09g03624 416 Pfam XPC-binding domain 290 345 IPR015360 GO:0003684|GO:0006289|GO:0043161
Aip09g03624 416 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Aip09g03624 416 MobiDBLite consensus disorder prediction 77 112 - -
Aip09g03624 416 MobiDBLite consensus disorder prediction 77 157 - -
Aip09g03624 416 CDD Ubl_Rad23 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03624 Aip-Chr9 142953961 142958438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03624 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 3.34e-09 53.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03624 09 142953961 142958438 Aip09g03624 09 142953961 142958438 ECH