Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03620 ATGTTAAGAAGTTCTCCTTCTCATGATAGATGTAGAAGTCGATCAAGATCAAGTGGTCATCCTAGGGACAGATCTCGTTCTCGTAGTATAGCAGATGAATATGCTCATTCCAAGAAAAGGCACTCTAGGGATCAAGGGTCCCTTCATCATAGTGGCAGAGATAAGACTGACTATGAGCATGATGAGGAAGGAATGAGAGCACGTGGAAGGGAGCATGGTCGTGGCAATGCAGACTTGTTGGTAGATGACAGGAGGGGACGGAAAAGAAACGAGACGAAGCAAGCAGGAATAGGGAGGTTGATTGGGTGCGTAAAACAGAAAAGGAACGTGAAAGGAGCTATGAGAGGGATAGAAGGGACAGATTTTGAGAGGGATAGAAGAAGGGGAAAGGAAAGGGACAGGAGTAGGGATAATACAAGGGGTGGTGAGAGAGGAAGAGATTGGGATAGTGAAAGGGATGATAAGAATCGGGAAAGAGATCACATTAAGGAGAGGGAGAGGCGAGATGATAGATATAGGCACACTGATAAAGACACCGCATATAATAAGGATAAGCATTTGCGTCATGAGGATGGTGAAGACATTCGAGACAGATATAGAAAACATTCAAGACACGAAGAAACTGAATATCATCGGGAGAGAAACAGGAATTCTGATTCTGTAAAATTTTATAATTCTGCAAGAAGTGCCATGGAAGAGAATGAAAGCAAGCTAGAAAGAGGTGAGGCTGAACAAGATTACTTAGATGAGGATACTCTGCAATTACCAGAGCAAGAAGAGGAAGATCTGAATAGGATTAAGGAGGAAAGTAGACGGAGAAGGGAAGCAATAATGGAGAAATACAAGAAGCAGCATCAGCAAGCAGAACAGGCAGCTGAAAATGAAGGAAAAGACAAGGAATCCGTGGACATTCCTACTGATGTTCCTGAAGCACATGATGGCAAGAATGATGGTATTGATGATGTAGAAACATCATTTGCTGTTGGGAAATCTACTCCTGAAAATTTGAATGGTGCTTCTAAGAAGATATCTGGTGCTGGTGGCCTGGGTGAGGGTACTCCTAAGAGTGAAAGATCAGACGACATGTTTTGTGATGATATATTTGGTGAGACACCAACTGGAGTTCGGAAATCAGGAAAAGGGGATGGTATACTGATTGAGAGGGTTGGCCTACATGACAATTGGGATGACGCAGAGGGGTATTACAGCTATCGTTTTGGTGAAATACTTGATGGCCGATACGAAGTCACTGCTGCACATGGGAGGGGTGTTTTTTCAACAGTGGTTCGGGCAAAGAATCTCAAGACTGGTAATGGTGAGCCAGATGAAGTTGCTATAAAAATCATTCGTAATAATGACACCATGTACAAGGCTGGTATGGATGAGTTGGTCATACTGAAGAAATTAGTAGGTGCAGATCCAGATGATAAGCGTCATTGTGTTCGTTTCCTTTCAAGTTTTAAGTACAGGAATCACCTTTGTTTAGTTTTTGAATCTCTTAATATGAATCTGCGTGAAGTATTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACAGCTGTGAGAGCATATGCAAAGCAACTATTTATTGCCCTGAAGCATCTTCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCTGATAATATGTTGGTGAACGAGGCTAAAAATGTCTTGAAGCTTTGCGACTTTGGTAATGCTATGTTTGCTGGTAAGAATGAAGTCACACCATATCTTGTCAGTCGGTTTTATCGGGCCCCTGAAATAATTCTTGGCTTGCAATATGATCATCCGTTGGATATTTGGTCAGTAGGCTGTTGTTTGTATGAGCTCTATACAGGGAAAGTTCTTTTTCCAGGTCTTACAAACAATGACATGCTTAGGCTTCACATGGAATTAAAGGGTCCTTTTCCAAAGAAGATGCTGCGTAAGGGAGCATTCACTGACCAACATTTTGATCAGGACCTGACTTTTCTTGCTACTGAAGAGGATCCTGTGACAAAAAAGACGATAAAGCGGATGATTCTCAACATAAAACCAAAAGATATTGGAACAATCATCACAGGCTCTCCTGGAGAGGATCCAAAGATGTTAGCCAACTTCAAGGATCTCATGGATAAAATTTTTATCTTGGACCCAGACAAGAGGCGTACACTATACTGGCGGTTCTTTCACTGGAATGTACTGTTTCCTATTGAGGCCTATCAGTGGTCTGAGGCATCCCTCCCGAATTTTCACTGGAGATGTTTGGCTGTGTTCTTGAAGCAAATTCATATATCTGTGCTGTGTCTTGGTCCTTCAATTTTCACCATCAGAGCCGTCACGTTCCCGTATCATATGGGTAAGAAACTGGATGCTCTGTTAGGTAGAAACTTTAAGGCTTCAAAGTTTACGGCAACCGTTAATCTTGCCTTATCTCGCCTCGCTATCCTAAAAAACAAGCGCCATGCACATCTCAAACTAGCCCGTTCTGACGTTCATCAACTTCTCCAACTTGGTCACCATGATCGCGCTCTCCTCCGAGCTGAGCATGTGATCAAGGAGCAGAATATGCTGGATGTATATGACAAGATTGAAGGATACTGCAACCTCTTGTTTGAGAGGGTCCACCTCATTGCACAAGAGAGAGAATGTCCTGAGGAACTAAAAGAGGCTGCATCAGGATTACTCTACATGGCTTCAAGGTGTGGAGATTTACCAGAGATTCTAGAGATTCGTGCAATGTTGACATCAAGATTTGGGAAGGAGTTTGCTGCTCGTGCTGTTGAGTTAAGAAATAACTGTGGTGTTGATCCTCAGTTGATACAAAAGCTTTCCACAAGGATGCCAAGCTTGGAAAGCAGAACGAAGGTACTCAAAGATATTGCTTCTGAGAACAACATTATTCTACTGATTGAAGAAGTTTCTTCTGTTACAATTGAGGAACAAGTCAATGTTGCAAAACAAAATCAGCAGGAGACTAGGCTAAAAGAAGAGAACCTCCACAATTTGCTTAGTAAAGAAAAAGATGAGGAGTCAATTGATTCCTTTAAGGCTATGAAGAAGTATAAGGATGTAGCTGATGCTGCAAAAGCTGCTTTTGAATCAGCAGCACAAGCAGCCGCTGCTGCAAGAGCTGCTCTGGAACTCTCACAATCCAGTCCTCACGGTCCTGATGATGATCATAATAGTCCAAGCCCCGGACCAAGAAAATTCTTGGATGAACAAGATTCTGATTTTGTGGAAGTTGTCCCTCGGCTGGAAGACTCAGCTGATGAGATTCCAAAGGGGGAGTCCGTGTCATTGGTTGCAGAAACTGAGGCTGATTCACTTGTGAAGGAACTAGAATTTGATGAGAGTGATGATGAGGCTGATAATAAAGACAAGAGTAATCAAACTTCTAAGCAGACACCAAGAGTATCAAATGATGTTCCAGAATCCAAGATGCATAGCAAACCTCATTTGGATTTGGAGAAGAGGCCGTTTTCAGTGAGAACTAGACATGGTTACTGA 3495 0.4243 MLRSSPSHDRCRSRSRSSGHPRDRSRSRSIADEYAHSKKRHSRDQGSLHHSGRDKTDYEHDEEGMRARGREHGRGNADLLVDDRRGRKRNETKQAGIGRLIGCVKQKRNVKGAMRGIEGTDFERDRRRGKERDRSRDNTRGGERGRDWDSERDDKNRERDHIKERERRDDRYRHTDKDTAYNKDKHLRHEDGEDIRDRYRKHSRHEETEYHRERNRNSDSVKFYNSARSAMEENESKLERGEAEQDYLDEDTLQLPEQEEEDLNRIKEESRRRREAIMEKYKKQHQQAEQAAENEGKDKESVDIPTDVPEAHDGKNDGIDDVETSFAVGKSTPENLNGASKKISGAGGLGEGTPKSERSDDMFCDDIFGETPTGVRKSGKGDGILIERVGLHDNWDDAEGYYSYRFGEILDGRYEVTAAHGRGVFSTVVRAKNLKTGNGEPDEVAIKIIRNNDTMYKAGMDELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLQYDHPLDIWSVGCCLYELYTGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTDQHFDQDLTFLATEEDPVTKKTIKRMILNIKPKDIGTIITGSPGEDPKMLANFKDLMDKIFILDPDKRRTLYWRFFHWNVLFPIEAYQWSEASLPNFHWRCLAVFLKQIHISVLCLGPSIFTIRAVTFPYHMGKKLDALLGRNFKASKFTATVNLALSRLAILKNKRHAHLKLARSDVHQLLQLGHHDRALLRAEHVIKEQNMLDVYDKIEGYCNLLFERVHLIAQERECPEELKEAASGLLYMASRCGDLPEILEIRAMLTSRFGKEFAARAVELRNNCGVDPQLIQKLSTRMPSLESRTKVLKDIASENNIILLIEEVSSVTIEEQVNVAKQNQQETRLKEENLHNLLSKEKDEESIDSFKAMKKYKDVADAAKAAFESAAQAAAAARAALELSQSSPHGPDDDHNSPSPGPRKFLDEQDSDFVEVVPRLEDSADEIPKGESVSLVAETEADSLVKELEFDESDDEADNKDKSNQTSKQTPRVSNDVPESKMHSKPHLDLEKRPFSVRTRHGY 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03620 1164 ProSitePatterns Serine/Threonine protein kinases active-site signature. 541 553 IPR008271 GO:0004672|GO:0006468
Aip09g03620 1164 PANTHER DUAL SPECIFICITY PROTEIN KINASE 89 720 - -
Aip09g03620 1164 Gene3D Phosphorylase Kinase; domain 1 384 473 - -
Aip09g03620 1164 ProSiteProfiles Protein kinase domain profile. 414 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g03620 1164 MobiDBLite consensus disorder prediction 1 361 - -
Aip09g03620 1164 SMART serkin_6 414 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g03620 1164 Gene3D - 786 971 IPR042277 -
Aip09g03620 1164 MobiDBLite consensus disorder prediction 1139 1164 - -
Aip09g03620 1164 MobiDBLite consensus disorder prediction 111 219 - -
Aip09g03620 1164 SUPERFAMILY Protein kinase-like (PK-like) 401 721 IPR011009 -
Aip09g03620 1164 MobiDBLite consensus disorder prediction 1081 1164 - -
Aip09g03620 1164 CDD STKc_PRP4 413 720 IPR044092 GO:0004674|GO:0006468|GO:0045292
Aip09g03620 1164 Pfam Regulator of Vps4 activity in the MVB pathway 801 962 IPR005061 GO:0015031
Aip09g03620 1164 Coils Coil 224 244 - -
Aip09g03620 1164 Pfam Protein kinase domain 416 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g03620 1164 MobiDBLite consensus disorder prediction 1 94 - -
Aip09g03620 1164 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 89 720 - -
Aip09g03620 1164 Coils Coil 271 298 - -
Aip09g03620 1164 MobiDBLite consensus disorder prediction 258 320 - -
Aip09g03620 1164 Gene3D Transferase(Phosphotransferase) domain 1 474 723 - -
Aip09g03620 1164 MobiDBLite consensus disorder prediction 1040 1068 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03620 Aip-Chr9 142902689 142913553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03620 413 720 Core Cell Cycle Gene Families AT1G66750 29.467 2.35e-24 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Aip09g03620 Pkinase 5.6e-43 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03620 09 142902689 142913553 Aip09g03620 09 142902689 142913553 ECH