Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03279 ATGCTTGGGGACTCAGCACTATTAGGAGGTGGAGGAAGTAGTGGTGGTGCTTCCGATGATGCAGTGGCAGCAGCAGCTGTGGCAGCATCAGGTGGCGGCGGCGGTGGATCAAATAATTCAGGCGACGATGAAAGAGGGAGGAATATAGAAGAAGGTGGCAGCAGCTTCGGCGGTAACCGGTGGCCGCGGCAAGAGACTTTGGCGCTGTTACGGATACGCTCCGATATGGAAGCTGCCTTTCGAGAGGCAAGTGTTAAGGGTCCTTTGTGGGAACAAGTCTCCAGGAAGATGGCAGAGCTTGGGTATCAGAGAAGTTCCAAGAAGTGCAAAGAGAAATTCGAGAACGTTTATAAGTACCATAAGAGAACAAAAGAAGGTCGAACTGGTAAATCAGATGGCAAAACTTACCGCTTCTTTGATCAGTTAGAAGCCCTTGAGAATCAGTCCCAGACAACACTTGTTCATCATCAATCTCCTAAACCAACGCCAATGCCTCCGCCTCCGCCTCCGCCTCCACCTCCCCCACCACCACCACCAACAACAACAACACATGTCACTGTTCCATCAACAACAATTATCCCTTCCTACCAAACACCACCACCACCACAACCAACAAACCCTACTACCTTACTATTCCCTTCTTCATCAACGACCACCATCCCGACCGATCTCTTGTCCAACTCCACCTCTTCCTCCACCTCCTCCGATGAATCAATGGAAGGAAGGCGGAGGAGGAAGCGCAAGTGGAAGGACTTCTTCCACAGGCTAATGACGGAGGTCATCGAGAAGCAGGAGGATCTTCAGAAGAGGTTCCTCGAAGCCGTGGAGAAGCGAGAGCGTGATCGCATGGCCAGGGAGGAATCTTGGAGGCTACAAGAGATGCAAAGGATCAATAGAGAGAGGGAGATTCTCGCCCAGGAACGCTCCATTGCCGCCGCCAAAGACGCCGCCGTCATGTCATTCTTGCAGAAGATAGCCGAACAGCACAATCTAGGACAAGCATTGAATAATACGATCAGCATTGTGCAACCACAGCCACAACCACAACCGCAACCACAATCACAACCAAATGCACCACAGATTCCTCCATCACCGGTGCAACAGCCTACGCCAGTAACGCAGGTTGCTGTTGCACCGGTTGCCGCTCAGCCTGTGGCGCCGTCAGCACCGACGGTACCACAGCAGCAACAAGTAGTGACAAGTATGGAAATCGTGAAAAGTGCTGACAATAACAATGGCGAGAAGTCGATCGGCGGAAGCTCGTCGAGGTGGCCGAAGGTGGAGGTTGAAGCGTTGATACGGCTGAGGACAAGCATGGACGCCAAGTACCAAGAAAACGGGCCAAAGGGGCCGTTATGGGAAGAGATCTCATCATCAATGAAGAAGCTCGGATACAACAGAAACGCTAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAATACTTCAAGAAAGTCAAAGAGAGCAACAAGAAGAGGCCAGAAGATTCCAAGACTTGTCCCTACTTTCACCAGCTGGACGCTCTCTACAGGGAGAAGAACAAGCTGGATATGGCGCCGAAGCCGCAGAGCATGGTGGCGCCGCTGATGGTGAGGCCGGAACAGCAGTGGCCTCCTCAGGCCATGGAAGACGCGGAGAATGACCCCATGGAGCGGCACCATGACGAGGATGACGAAGATGAGGAGCAGGAGAAGGAGACTGGAGACGAAGAGGATGAAGAGGATGAAGGTGGTGGGAATGGCAATGGCGGTAATAACTATGAGATAGTGGGAAGCAAGGCTGCAACAGCTTCAGCTGAGTAG 1803 0.523 MLGDSALLGGGGSSGGASDDAVAAAAVAASGGGGGGSNNSGDDERGRNIEEGGSSFGGNRWPRQETLALLRIRSDMEAAFREASVKGPLWEQVSRKMAELGYQRSSKKCKEKFENVYKYHKRTKEGRTGKSDGKTYRFFDQLEALENQSQTTLVHHQSPKPTPMPPPPPPPPPPPPPPPTTTTHVTVPSTTIIPSYQTPPPPQPTNPTTLLFPSSSTTTIPTDLLSNSTSSSTSSDESMEGRRRRKRKWKDFFHRLMTEVIEKQEDLQKRFLEAVEKRERDRMAREESWRLQEMQRINREREILAQERSIAAAKDAAVMSFLQKIAEQHNLGQALNNTISIVQPQPQPQPQPQSQPNAPQIPPSPVQQPTPVTQVAVAPVAAQPVAPSAPTVPQQQQVVTSMEIVKSADNNNGEKSIGGSSSRWPKVEVEALIRLRTSMDAKYQENGPKGPLWEEISSSMKKLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYREKNKLDMAPKPQSMVAPLMVRPEQQWPPQAMEDAENDPMERHHDEDDEDEEQEKETGDEEDEEDEGGGNGNGGNNYEIVGSKAATASAE 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03279 600 MobiDBLite consensus disorder prediction 585 600 - -
Aip09g03279 600 CDD GT1 422 487 - -
Aip09g03279 600 ProSiteProfiles Myb-like domain profile. 59 117 IPR001005 -
Aip09g03279 600 MobiDBLite consensus disorder prediction 1 20 - -
Aip09g03279 600 MobiDBLite consensus disorder prediction 194 208 - -
Aip09g03279 600 Pfam Myb/SANT-like DNA-binding domain 59 145 IPR044822 -
Aip09g03279 600 Pfam Myb/SANT-like DNA-binding domain 422 509 IPR044822 -
Aip09g03279 600 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 595 - -
Aip09g03279 600 ProSiteProfiles Myb-like domain profile. 422 480 IPR001005 -
Aip09g03279 600 PRINTS Proline rich extensin signature 151 163 - -
Aip09g03279 600 PRINTS Proline rich extensin signature 165 181 - -
Aip09g03279 600 PRINTS Proline rich extensin signature 195 216 - -
Aip09g03279 600 PRINTS Proline rich extensin signature 344 369 - -
Aip09g03279 600 Gene3D - 424 485 - -
Aip09g03279 600 Gene3D - 61 122 - -
Aip09g03279 600 MobiDBLite consensus disorder prediction 148 246 - -
Aip09g03279 600 MobiDBLite consensus disorder prediction 27 61 - -
Aip09g03279 600 MobiDBLite consensus disorder prediction 342 372 - -
Aip09g03279 600 MobiDBLite consensus disorder prediction 159 183 - -
Aip09g03279 600 MobiDBLite consensus disorder prediction 209 236 - -
Aip09g03279 600 SUPERFAMILY Formin homology 2 domain (FH2 domain) 168 176 - -
Aip09g03279 600 CDD GT1 59 124 - -
Aip09g03279 600 PANTHER - 1 595 - -
Aip09g03279 600 MobiDBLite consensus disorder prediction 345 369 - -
Aip09g03279 600 SMART sant 420 482 IPR001005 -
Aip09g03279 600 SMART sant 57 119 IPR001005 -
Aip09g03279 600 MobiDBLite consensus disorder prediction 521 600 - -
Aip09g03279 600 MobiDBLite consensus disorder prediction 553 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03279 Aip-Chr9 138896674 138900277 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03279 56 537 Trihelix Transcription Factor Family AT1G76880 56.445 1.35e-166 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Aip09g03279 Myb_DNA-bind_4 7.8e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03279 - - ahf:112712434 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03279 09 138896674 138900277 Aip09g03279 09 138896674 138900277 ECH
Aip05g03976 05 148018103 148021239 Aip09g03279 09 138896674 138900277 PCT