Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02481 ATGTCTTCACAAAGTGTAGTTCTTTCATCACTTTTGCTCATGTCATTGGTTTCTTCTTCTGGCTTGTGTTTTGGCTCTTACATTGGCCCTAGGAGGTTGATGCAGACAAAACATGATGAAAATATGGATATCATGTTAAGGGTTCATCATCAATCAACACCATCTTCAATGTCTCAAAAAACGTTTAGTGTTTCACATTATGGAGCAAAATCTGGTGATGGAAGAGTTGATAATGAGGCATTTGAGAAGGCATGGAATTTAGCATGTTCAGAAGGGGGTGCTCTTGTGGTCCCAGAAGAGAAGGTTTATCACCTTAAGCCAATAAAATTTTCAGGCCCATGCCAAGCCACTACCACTTTTATGTTATATGGAACAATCAAAGCATGGCCTAAAATTTCAGCCTATGAAGAAGATAGACAGCACTGGATTATGTTTGATAATATAACGAATTTTGGTGTTGATGGTGGCGGCACTTTCAACGGCAATGGAAAAATATGGTGGGAAAACTCTTGCAAAACTAACGAAAGCCTTCCATGTAAGGATGCACCAACTGCTGTGACTTTCAATGAATGCAACAATTTGAGAGTGGAAAACGTTGCATTCCGAAATGCACAACAAATGCATGTTAGATTTCAGAAATGCAATAACGTTACAGCTTCAAATCTGGTGGTTCAAGCTCCTGGGGATAGCCCTAACACTGATGGACTTCACGTCACTGAAACCAAAAATATATTCATAAGAAACTCTGTCATTCGTACAGGTGATGACTGCATTTCAATAGTGAGTGGGTCCCAAAATGTTCGTGCTACGGATATAGTTTGTGGACCAGGCCATGGAATCAGCATTGGAAGCTTAGGAGCTGGTAATTCAGAAGCACAAGTCTCGAATGTGGTAATCGACGGAGCCATTTTCACAGGAACCACTAATGGTGTTAGAATTAAGACTTGGCAGGGAGGTTCTGGATATGCAAAAGACATCAAATTTGTTAATATAGAAATGCGAAACGTGACCAATCCCATAATCATAGATCAAAACTACTGCGATCAGAAAGAACCATGCCAAGAGCAGGAATCAGCAGTGAAATTGAGCAATGTGGTGTACCAGAACATCATAGGAACAAGTGCAACACAAGTTGCAATCAAATTCAACTGCAGCAAAACCGTCCCCTGCAGATCAATCTATTTGCAAGACGTAATTCTAAAGCCGGAACGCCATGGCAGCGACACGGTTGCGACATGTGAGAACGTTAGATATGCCAACAGAGGACAGCTTTTTCCTCAGTGCTCTACTGCTTGA 1296 0.412 MSSQSVVLSSLLLMSLVSSSGLCFGSYIGPRRLMQTKHDENMDIMLRVHHQSTPSSMSQKTFSVSHYGAKSGDGRVDNEAFEKAWNLACSEGGALVVPEEKVYHLKPIKFSGPCQATTTFMLYGTIKAWPKISAYEEDRQHWIMFDNITNFGVDGGGTFNGNGKIWWENSCKTNESLPCKDAPTAVTFNECNNLRVENVAFRNAQQMHVRFQKCNNVTASNLVVQAPGDSPNTDGLHVTETKNIFIRNSVIRTGDDCISIVSGSQNVRATDIVCGPGHGISIGSLGAGNSEAQVSNVVIDGAIFTGTTNGVRIKTWQGGSGYAKDIKFVNIEMRNVTNPIIIDQNYCDQKEPCQEQESAVKLSNVVYQNIIGTSATQVAIKFNCSKTVPCRSIYLQDVILKPERHGSDTVATCENVRYANRGQLFPQCSTA 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02481 431 SMART pbh1 323 344 IPR006626 -
Aip08g02481 431 SMART pbh1 264 284 IPR006626 -
Aip08g02481 431 SMART pbh1 214 240 IPR006626 -
Aip08g02481 431 SMART pbh1 294 315 IPR006626 -
Aip08g02481 431 SMART pbh1 241 262 IPR006626 -
Aip08g02481 431 Gene3D - 47 428 IPR012334 -
Aip08g02481 431 Pfam Glycosyl hydrolases family 28 95 417 IPR000743 GO:0004650|GO:0005975
Aip08g02481 431 SUPERFAMILY Pectin lyase-like 51 429 IPR011050 -
Aip08g02481 431 PANTHER POLYGALACTURONASE 5 429 - -
Aip08g02481 431 PANTHER - 5 429 - -
Aip08g02481 431 ProSitePatterns Polygalacturonase active site. 271 284 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02481 Aip-Chr8 106369143 106374633 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01241 03 12294010 12297400 Aip08g02481 08 106369143 106374633 PCT
Aip10g03568 10 134085849 134087846 Aip08g02481 08 106369143 106374633 PCT