Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01973 ATGAGCAACATAAGCTTGGTAGAGGCAAGGCTTCCACCAGGGTTCAGATTTCATCCAAAAGATGAAGAGCTTGTGTGTGATTACTTGATGAAGAAGTTCACGCACAATGAATCCCTTCTCATGATTGATGTCGACCTCAACAAGTGTGAGCCATGGGATATTCCTGAAACAGCATGTGTGGGAGGGAAGGAGTGGTACTTCTACACACAGAGAGACAGAAAGTATGCAACGGGGCTGCGTACAAACAGAGCAACGGCATCAGGATATTGGAAGGCCACTGGCAAGGACAGGCCTATCCTTAGGAAGGGCAGCCTTGTTGGTATGCGAAAGACTCTTGTCTTCTATCAAGGTCGGGCTCCCAAAGGCCGTAAGACTGAGTGGGTCATGCATGAGTTTCGCATTGAACCTCCTCTTCCTCCCCCCAACACTTCTTCTAAGGAAGATTGGGTGTTGTGTAGGGTGTTTTACAAGAACAGAGAAGTTGGTGGCAAACCTAATAGCATGGGAAGCTGCTATGATGACACAGGCTCTTCATCTCTTCCAGCATTAATGGATTCTTTCATCAGCTTTGACCAACAACAACAACCTCAAACCCATCTTCATGCTGATGAGTATGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCACACCCAAACAAGCCCTATTTTCAACCACATAATGGAGCCTAAGTTATTCCCTACCAACAACAACAATAATAATGCAACTTTATATGGTGGAGGAGGAACTACTACAACATCCAATTTGGGTTCTTGCTTAGACCCTTTTTCATGTGATAGGAAAGTATTGAAAGCTGTTTTGAGTCAGCTCACAAATATGGAAAGAAACATACCTAATAATAATAACAACAATACAAATAGTATAAAAGGGTCACCAAGTTTAGGAGAAGGTAGTTCTGAGAGTTACTTATCTGAGGAAGATTGGGTGTTGTGTAGGGTGTTTTACAAGAACAGAGAAGTTGGTGGCAAACCTAATAGCATGGGAAGCTGCTATGATGACACAGGCTCTTCATCTCTTCCAGCATTAATGGATTCTTTCATCAGCTTTGACCAACAACAACAACCTCAAACCCATCTTCATGCTGATGAGTATGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCACACCCAAACAAGCCCTATTTTCAACCACATAATGGAGCCTAAGTTATTCCCTACCAACAACAACAATAATAATGCAACTTTATATGGTGGAGGAGGAACTACTACAACATCCAATTTGGGTTCTTGCTTAGACCCTTTTTCATGTGATAGGAAAGTATTGAAAGCTGTTTTCAGTCAGCTCACAAATATGGAAAGAAACATACCTAATAATAATAACAACAATACAAATAGTATAAAAGGGTCACCAAGTTTAGGAGAAGGTAGTTCTGAGAGTTACTTATCTGAGGCAAAGTTAATATATGTGAAAAAAATCAGACAAGCGATTGACAACCAAACTGAAGTTACTGTACAACTCATTAATTATACAAAGACCGGAGGAGGAGCTATTTCAGTAGCTCTTGTCTTGAATCAAAATGCTGCCAAGGTAGCTGCGGCTTCGGAAACTGCTGCATTCTCCCAAAATCCTGCACTTGTTCTTGCTCCAGTTATCCCAAGAGTCAACTGA 1647 0.4183 MSNISLVEARLPPGFRFHPKDEELVCDYLMKKFTHNESLLMIDVDLNKCEPWDIPETACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILRKGSLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEPPLPPPNTSSKEDWVLCRVFYKNREVGGKPNSMGSCYDDTGSSSLPALMDSFISFDQQQQPQTHLHADEYEQVPCFSIFSHTQTSPIFNHIMEPKLFPTNNNNNNATLYGGGGTTTTSNLGSCLDPFSCDRKVLKAVLSQLTNMERNIPNNNNNNTNSIKGSPSLGEGSSESYLSEEDWVLCRVFYKNREVGGKPNSMGSCYDDTGSSSLPALMDSFISFDQQQQPQTHLHADEYEQVPCFSIFSHTQTSPIFNHIMEPKLFPTNNNNNNATLYGGGGTTTTSNLGSCLDPFSCDRKVLKAVFSQLTNMERNIPNNNNNNTNSIKGSPSLGEGSSESYLSEAKLIYVKKIRQAIDNQTEVTVQLINYTKTGGGAISVALVLNQNAAKVAAASETAAFSQNPALVLAPVIPRVN 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01973 548 SUPERFAMILY NAC domain 2 158 IPR036093 GO:0003677|GO:0006355
Aip08g01973 548 MobiDBLite consensus disorder prediction 280 305 - -
Aip08g01973 548 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 229 - -
Aip08g01973 548 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 308 394 - -
Aip08g01973 548 Gene3D NAC domain 20 162 IPR036093 GO:0003677|GO:0006355
Aip08g01973 548 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Aip08g01973 548 ProSiteProfiles NAC domain profile. 11 157 IPR003441 GO:0003677|GO:0006355
Aip08g01973 548 PANTHER NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN 308 394 - -
Aip08g01973 548 PANTHER NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN 3 229 - -
Aip08g01973 548 MobiDBLite consensus disorder prediction 445 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01973 Aip-Chr8 56763038 56777322 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01973 311 476 NAC Transcription Factor Family AT1G56010 43.353 8.61e-26 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip08g01973 NAM 1.3e-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01973 08 56763038 56777322 Aip08g01973 08 56763038 56777322 ECH