Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01957 ATGCTTATACTAGTTGGGAACGTGCAAGGAACAATAGGTTCTGTGGCTACCCCATTGAGTTTTGGAAGCTTAACGGGTGTGAGTTCCAATGGAGGAAGGTCCCGTTCTGTTGTGAGGAGGGTGTCCCTTTCAAGAGGTAACTCTATTAAGGATAAGAGGAGATGGCATTGTATATCACTGTCTGTGTGTAGATATTCTGTTACCACAACCGATTTTGTCGCTGACCAGGGAAATTCAGTGTCCCTTGATTCTAACAGTAGTAGAGGAAGCCAAGGTGGTGATGATGGTAGTGGTGGTTTTGTGCTTAAGCCTCCTCCTAAGCCTGTTTTGAAGTCCCAGGAGAATAAGGATAGTCCCCTTTTGGGCTCGAATTCGGAGTCCTGGGGGAATTCGCGGAATGGCAAGTCCCTAGATGATGATGTACAGGAGAGGAATAAAGTGATTGAGTCACTTGGTGAGGTGTTGGAGAAAGCTGAAAAGTTGGAAAGCCCCAAGTTGGATGATAAAAGGAATAATGGCTCAATAAATAAACCCACAGCGCCCAATACAAATGGTAATTCTAAGGTCAGTACACCGGTAAATTCAGCTAAAACCCAGAAGGCTAAAACCTTGAAGAGTGTATGGCGTAAGGGGGATTCGGTCGCAAATGTACAGAAGGTTGTTAAGGAGGTACCTAAGCCTAATAACAAGAGTGTGGTAGGGGAAAAATCTGAAATAGGGGCAGAAGAGAAGATAACATCCGAGTCTCGTGCTCCCCAGCCCTCATCAAAATCTCAGCCAATGTTACAAGCAAAACCTTCTGTAGCTCCACCACCCATAAAAAAGCCTGTGGTGTTGAAGGATAAGGGGGCAGCTAATGCATCTGTTAAATCTAAAGAAAGGAAGCCTGGGCCGATCTTAATTGACAAGTTTGCTTCCAAGAAACCCGTTGTCGATCCTGTAATTGCTCAAGCAGTCCTAGCCCCTCCAAAACCAGGGAAGGGCCCTCCATCAGGAAAGTTTAAAGATGACTACAGGAAGAGAGGTGCTCCAGCTGGAGGAGCAAGAAGGCGTCTACTAAATGATGATGATGATGTGATTCCCGATGAGGACACATCGGAACTCAATGTCTCTATTCCTGGTGCTGCAAGAAAAGGAAGAAAATGGAGTAAAGCGAGTCGAAAGGCAGCAAGGCTACAGGCTGCCAAGGATGCGGCTCCTGTCAAAGTCGAAATTCTAGAGGTCAGTGACAAAGGTATGCTGGTGGAGGAGTTAGCCTTCAACTTGGCGATCAGTGAAGGAGAAATCCTTGGATCTTTGTATGCCAAGGGGATCAAACCAGACGGCGTGCAAACTCTCGACAAAGATATGGTGAAGATGATATGTAAAGAGTATGATGTGGAAGTTATAGATGCTGATCCAGTCAAAGTTGAATCGTTAGCAAAGAAAAGGGAAATTCTTGATGAAGATGATCTTGACAAACTCAAAGATAGACCTCCTGTCATCACTATTATGGGCCACGTAGATCACGGCAAGACAACTCTTTTGGATTATATACGGAAGAGCAAGGTAGCTGCTTCTGAAGCCGGTGGGATCACCCAGGGGATCGGGGCTTATAAAGTAGAAGTACCTGTTGACGGAAAACCTTTGCCCTGTGTTTTCCTTGATACTCCTGGGCATGAGGCGTTTGGGGCAATGAGAGCTCGTGGGGCAAGTGTGACAGACATTGCTATCATTGTTGTGGCTGCTGATGATGGCATTCGGCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCAGCGGGAGTACCCATAATCATTGCCATAAACAAGATAGATAAGGACGGAGCAAATCCTGAGCGAGTCATGCAAGAGCTTTCTTCTATTGGTTTAATGCCAGAAGATTGGGGTGGTGACACCCCAATGGTTCAGATAAGTGCTCTTAAAGGGCAGAATATAGATGATCTTTTGGAAACTGTTATGCTTGTGGCTGAGTTGCAAGAGTTGAAAGGAAATCCTGATAGAAGCGCAAAGGGAACAGTCATAGAGGCGGGTCTTGATAAATCAAAAGGACCTTTTGCTACCTTTATTGTGCAAAATGGTACCCTCAGAAGGGGAGATATAGTAGTTTGCGGAGAAGCGTTTGGAAAGGTGCGAGCTTTGTTTGATGATGCTGGAAAGCGTGTTGATTTAGCTACACCCTCTATTCCCGTACAGGTTATTGGATTGAATAATGTTCCGATTGCCGGTGATGAATTTGAGGTTGTTGAATCCCTTGATACTGCACGTGAAAGAGCAGAATCCCGTGCTGAGTTGTTGCGAAATGAGCGTATTTCTGCAAAGGCAGGGGATGGCAAGATTACCCTTTCTTCCTTAGCTTCTGCAGTTTCGTCAGGAAAGCTTTCTGGACTCGACTTGCATCAACTAAATATTATCTTGAAGGTTGATCTTCAGGGATCCATTGAAGCTGTCAGACAAGCCCTGCAGGTGCTACCACAAGATAACGTTACATTGAAGTTTTTGTTGGAAGCAACAGGCGATGTAACCACAAGTGACATTGATCTTGCAGTTGCAAGCAAAGCAATTATTTTTGGATTTAATGTCAAAGCACCAGGTTCGGTGAAAAGCTATGCAGATAATAAAGCTGTTGAGATTAGATTATACAGAGTCATTTACGACTTAATCGATGATGTCAGAAATGCAATGGAGGGACTCTTAGAGCCTGTTGAGGAGCAAATAAAAATTGGCTTAGCAGAAGTGCGAGCCACATTCAGCAGTGGTAGTGGTCGTGTTGCGGGATGCATGGTTAATGAGGGAAAGGTGGAGAAAGGATGCGGTATTCGAGTCATTCGGAAGGGGAAAGAAGTTCACGTTGGTACTGTTGATTCTTTGAGACGGGTAAAGGAGATAGTTAAAGAGGTAAATGCTGGTCTTGAGTGTGGAATCGGGTTAGAGGACTTTGATGACTGGGAAGAGGGTGATATCCTTGAAGCCTTCAACTCAGTTCAGAAGAGGCGGACTCTTGAAGAGGCCTCAGAATCCATGGCGGCTGCTGTGGAGGGGGGGAAAAAAGGGGTTATACTTATACACTCTTCAGTTGAGTGCAATGATCATTGTGCAAAGAGGTCAAAACATAACATCAAAATCATGAGCTGGCCTGCGCATAAGGGTTCCCCACTCCCATCCCGAGGCGCCAAGGGACTGAAGTTTTTGAAACTAAGGCCATAG 3207 0.4524 MLILVGNVQGTIGSVATPLSFGSLTGVSSNGGRSRSVVRRVSLSRGNSIKDKRRWHCISLSVCRYSVTTTDFVADQGNSVSLDSNSSRGSQGGDDGSGGFVLKPPPKPVLKSQENKDSPLLGSNSESWGNSRNGKSLDDDVQERNKVIESLGEVLEKAEKLESPKLDDKRNNGSINKPTAPNTNGNSKVSTPVNSAKTQKAKTLKSVWRKGDSVANVQKVVKEVPKPNNKSVVGEKSEIGAEEKITSESRAPQPSSKSQPMLQAKPSVAPPPIKKPVVLKDKGAANASVKSKERKPGPILIDKFASKKPVVDPVIAQAVLAPPKPGKGPPSGKFKDDYRKRGAPAGGARRRLLNDDDDVIPDEDTSELNVSIPGAARKGRKWSKASRKAARLQAAKDAAPVKVEILEVSDKGMLVEELAFNLAISEGEILGSLYAKGIKPDGVQTLDKDMVKMICKEYDVEVIDADPVKVESLAKKREILDEDDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKSKVAASEAGGITQGIGAYKVEVPVDGKPLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKIDKDGANPERVMQELSSIGLMPEDWGGDTPMVQISALKGQNIDDLLETVMLVAELQELKGNPDRSAKGTVIEAGLDKSKGPFATFIVQNGTLRRGDIVVCGEAFGKVRALFDDAGKRVDLATPSIPVQVIGLNNVPIAGDEFEVVESLDTARERAESRAELLRNERISAKAGDGKITLSSLASAVSSGKLSGLDLHQLNIILKVDLQGSIEAVRQALQVLPQDNVTLKFLLEATGDVTTSDIDLAVASKAIIFGFNVKAPGSVKSYADNKAVEIRLYRVIYDLIDDVRNAMEGLLEPVEEQIKIGLAEVRATFSSGSGRVAGCMVNEGKVEKGCGIRVIRKGKEVHVGTVDSLRRVKEIVKEVNAGLECGIGLEDFDDWEEGDILEAFNSVQKRRTLEEASESMAAAVEGGKKGVILIHSSVECNDHCAKRSKHNIKIMSWPAHKGSPLPSRGAKGLKFLKLRP 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01957 1068 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 490 663 IPR000795 GO:0003924|GO:0005525
Aip08g01957 1068 MobiDBLite consensus disorder prediction 173 202 - -
Aip08g01957 1068 Hamap Translation initiation factor IF-2 [infB]. 7 999 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Aip08g01957 1068 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 797 909 IPR036925 -
Aip08g01957 1068 Gene3D - 487 665 IPR027417 -
Aip08g01957 1068 Pfam Translation-initiation factor 2 798 891 IPR023115 -
Aip08g01957 1068 Gene3D Translation factors 666 781 - -
Aip08g01957 1068 MobiDBLite consensus disorder prediction 159 301 - -
Aip08g01957 1068 TIGRFAM small_GTP: small GTP-binding protein domain 492 653 IPR005225 GO:0005525
Aip08g01957 1068 SUPERFAMILY Translation proteins 905 999 IPR009000 -
Aip08g01957 1068 CDD mtIF2_IVc 909 991 - -
Aip08g01957 1068 Pfam Elongation factor Tu GTP binding domain 495 655 IPR000795 GO:0003924|GO:0005525
Aip08g01957 1068 Gene3D - 798 903 IPR036925 -
Aip08g01957 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 484 663 IPR027417 -
Aip08g01957 1068 Gene3D Translation factors 904 1000 - -
Aip08g01957 1068 SUPERFAMILY Translation proteins 666 750 IPR009000 -
Aip08g01957 1068 TIGRFAM IF-2: translation initiation factor IF-2 411 1001 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Aip08g01957 1068 Coils Coil 749 769 - -
Aip08g01957 1068 CDD IF2_eIF5B 493 659 - -
Aip08g01957 1068 PRINTS GTP-binding elongation factor signature 494 507 IPR000795 GO:0003924|GO:0005525
Aip08g01957 1068 PRINTS GTP-binding elongation factor signature 546 556 IPR000795 GO:0003924|GO:0005525
Aip08g01957 1068 PRINTS GTP-binding elongation factor signature 562 573 IPR000795 GO:0003924|GO:0005525
Aip08g01957 1068 PRINTS GTP-binding elongation factor signature 598 607 IPR000795 GO:0003924|GO:0005525
Aip08g01957 1068 MobiDBLite consensus disorder prediction 116 135 - -
Aip08g01957 1068 MobiDBLite consensus disorder prediction 248 263 - -
Aip08g01957 1068 CDD IF2_mtIF2_II 670 764 IPR044145 -
Aip08g01957 1068 MobiDBLite consensus disorder prediction 320 366 - -
Aip08g01957 1068 PANTHER TRANSLATION INITIATION FACTOR IF-2, CHLOROPLASTIC 39 1009 - -
Aip08g01957 1068 ProSitePatterns Initiation factor 2 signature. 952 974 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Aip08g01957 1068 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 39 1009 IPR015760 -
Aip08g01957 1068 MobiDBLite consensus disorder prediction 77 93 - -
Aip08g01957 1068 MobiDBLite consensus disorder prediction 330 357 - -
Aip08g01957 1068 MobiDBLite consensus disorder prediction 77 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01957 Aip-Chr8 55426915 55436200 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01957 491 889 Eukaryotic Initiation Factors Gene Family AT1G76810 29.462 4.80e-27 117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01957 08 55426915 55436200 Aip08g01957 08 55426915 55436200 ECH